Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq311227 114 8e-21 seq11610 111 1e-19 >seq311227 Length=303 Score = 114 bits (126), Expect = 8e-21 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || || |||||||| || || || ||||| || || || || Sbjct 212 CCTCCTCTCAGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGCTC 153 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | |||||||| |||||||||||||| || || || || || Sbjct 152 AGTGTTCTTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGA 93 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT--TCGCTCTCC 34656 | ||| ||||| ||| |||| |||| ||| || | ||||||||| | | ||| Sbjct 92 ATTCCTTCCTTATCTTGGATC-TTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCT-- 36 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTT 34691 ||||||| |||||| ||||| ||||| || ||||| Sbjct 35 ACTTCCAAGGTTATTGTTTTTCCGGTCAAAGTTTT 1 >seq11610 Length=252271 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || |||||| ||| || || ||||| || || || Sbjct 43327 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 43386 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| || ||||| || || | ||| ||||| || || Sbjct 43387 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 43446 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || || | || ||||| | |||||| Sbjct 43447 ATGCCCTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 43505 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || |||||||| || || ||||| || |||||||| Sbjct 43506 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43553 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| ||||| || ||||| ||| || || ||||| || || || || || ||| | Sbjct 43111 CGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 43170 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| || ||||| || ||||| || || | ||| ||||| || || | ||||||||| Sbjct 43171 TCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 43230 Query 34612 TCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| |||| || | || || | || ||||| | |||||| |||| ||| || Sbjct 43231 TCTTGGATC-TTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 43289 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || || ||||| || |||||||| Sbjct 43290 GGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 312761172598241