Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_028812.1 Length=58546 Score E Sequences producing significant alignments: (Bits) Value seq479074 93.3 2e-14 seq50539 93.3 2e-14 seq50537 93.3 2e-14 seq50535 93.3 2e-14 seq49363 93.3 2e-14 seq49361 93.3 2e-14 seq49359 93.3 2e-14 >seq479074 Length=711 Score = 93.3 bits (102), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 24694 CCCCTATCGAGTCACGATGCCGAACTGCAATGCTTCGACAGCGCCTTTATTCCAGTCGGT 24753 ||| |||||||| | ||||||||| ||||| | |||||| | | |||||||| | Sbjct 459 CCCTTATCGAGTGATGATGCCGAATTGCAAAGATTCGACGTTGTTCTGGTTCCAGTCACT 518 Query 24754 ATTACCCGGAGTTTGTTCGTGGGTAACTTGGTAGTATTTATAGTCTTCGGTCAATGGTAC 24813 ||||| | ||| ||| | | || || || || || ||||| | || || Sbjct 519 TCCGCCCGGCGCTTGCTCGAACGATGCCTGATAATACTTGTACGACTCGGTGAGCGGCAC 578 Query 24814 TTGGACTTCTTTCTCAGAACCCCCGTCAGTCTGGATCACCATACCGAGTTTACGGTCGTC 24873 || | ||| || | ||| || || || | || ||||| ||||||||||| || || Sbjct 579 CTGAATTTCAGTCGGCGTACCGCCTTCCGTGTTGACCACCAGCCCGAGTTTACGATCATC 638 Query 24874 TAAGTCCCCTTTACGGGCATACGCAATCACCGACACGCCGAAAACC---TTATTGTT 24927 | ||| ||||||||||| ||||| || || |||||| |||| | | |||||||| Sbjct 639 AAGGTCGCCTTTACGGGCGTACGCGATGACGGACACGGCGAAGATCTGGTTATTGTT 695 >seq50539 Length=2163 Score = 93.3 bits (102), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 24694 CCCCTATCGAGTCACGATGCCGAACTGCAATGCTTCGACAGCGCCTTTATTCCAGTCGGT 24753 ||| |||||||| | ||||||||| ||||| | |||||| | | |||||||| | Sbjct 459 CCCTTATCGAGTGATGATGCCGAATTGCAAAGATTCGACGTTGTTCTGGTTCCAGTCACT 518 Query 24754 ATTACCCGGAGTTTGTTCGTGGGTAACTTGGTAGTATTTATAGTCTTCGGTCAATGGTAC 24813 ||||| | ||| ||| | | || || || || || ||||| | || || Sbjct 519 TCCGCCCGGCGCTTGCTCGAACGATGCCTGATAATACTTGTACGACTCGGTGAGCGGCAC 578 Query 24814 TTGGACTTCTTTCTCAGAACCCCCGTCAGTCTGGATCACCATACCGAGTTTACGGTCGTC 24873 || | ||| || | ||| || || || | || ||||| ||||||||||| || || Sbjct 579 CTGAATTTCAGTCGGCGTACCGCCTTCCGTGTTGACCACCAGCCCGAGTTTACGATCATC 638 Query 24874 TAAGTCCCCTTTACGGGCATACGCAATCACCGACACGCCGAAAACC---TTATTGTT 24927 | ||| ||||||||||| ||||| || || |||||| |||| | | |||||||| Sbjct 639 AAGGTCGCCTTTACGGGCGTACGCGATGACGGACACGGCGAAGATCTGGTTATTGTT 695 >seq50537 Length=5604 Score = 93.3 bits (102), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 24694 CCCCTATCGAGTCACGATGCCGAACTGCAATGCTTCGACAGCGCCTTTATTCCAGTCGGT 24753 ||| |||||||| | ||||||||| ||||| | |||||| | | |||||||| | Sbjct 459 CCCTTATCGAGTGATGATGCCGAATTGCAAAGATTCGACGTTGTTCTGGTTCCAGTCACT 518 Query 24754 ATTACCCGGAGTTTGTTCGTGGGTAACTTGGTAGTATTTATAGTCTTCGGTCAATGGTAC 24813 ||||| | ||| ||| | | || || || || || ||||| | || || Sbjct 519 TCCGCCCGGCGCTTGCTCGAACGATGCCTGATAATACTTGTACGACTCGGTGAGCGGCAC 578 Query 24814 TTGGACTTCTTTCTCAGAACCCCCGTCAGTCTGGATCACCATACCGAGTTTACGGTCGTC 24873 || | ||| || | ||| || || || | || ||||| ||||||||||| || || Sbjct 579 CTGAATTTCAGTCGGCGTACCGCCTTCCGTGTTGACCACCAGCCCGAGTTTACGATCATC 638 Query 24874 TAAGTCCCCTTTACGGGCATACGCAATCACCGACACGCCGAAAACC---TTATTGTT 24927 | ||| ||||||||||| ||||| || || |||||| |||| | | |||||||| Sbjct 639 AAGGTCGCCTTTACGGGCGTACGCGATGACGGACACGGCGAAGATCTGGTTATTGTT 695 >seq50535 Length=5604 Score = 93.3 bits (102), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 24694 CCCCTATCGAGTCACGATGCCGAACTGCAATGCTTCGACAGCGCCTTTATTCCAGTCGGT 24753 ||| |||||||| | ||||||||| ||||| | |||||| | | |||||||| | Sbjct 459 CCCTTATCGAGTGATGATGCCGAATTGCAAAGATTCGACGTTGTTCTGGTTCCAGTCACT 518 Query 24754 ATTACCCGGAGTTTGTTCGTGGGTAACTTGGTAGTATTTATAGTCTTCGGTCAATGGTAC 24813 ||||| | ||| ||| | | || || || || || ||||| | || || Sbjct 519 TCCGCCCGGCGCTTGCTCGAACGATGCCTGATAATACTTGTACGACTCGGTGAGCGGCAC 578 Query 24814 TTGGACTTCTTTCTCAGAACCCCCGTCAGTCTGGATCACCATACCGAGTTTACGGTCGTC 24873 || | ||| || | ||| || || || | || ||||| ||||||||||| || || Sbjct 579 CTGAATTTCAGTCGGCGTACCGCCTTCCGTGTTGACCACCAGCCCGAGTTTACGATCATC 638 Query 24874 TAAGTCCCCTTTACGGGCATACGCAATCACCGACACGCCGAAAACC---TTATTGTT 24927 | ||| ||||||||||| ||||| || || |||||| |||| | | |||||||| Sbjct 639 AAGGTCGCCTTTACGGGCGTACGCGATGACGGACACGGCGAAGATCTGGTTATTGTT 695 >seq49363 Length=7605 Score = 93.3 bits (102), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 24694 CCCCTATCGAGTCACGATGCCGAACTGCAATGCTTCGACAGCGCCTTTATTCCAGTCGGT 24753 ||| |||||||| | ||||||||| ||||| | |||||| | | |||||||| | Sbjct 2432 CCCTTATCGAGTGATGATGCCGAATTGCAAAGATTCGACGTTGTTCTGGTTCCAGTCACT 2491 Query 24754 ATTACCCGGAGTTTGTTCGTGGGTAACTTGGTAGTATTTATAGTCTTCGGTCAATGGTAC 24813 ||||| | ||| ||| | | || || || || || ||||| | || || Sbjct 2492 TCCGCCCGGCGCTTGCTCGAACGATGCCTGATAATACTTGTACGACTCGGTGAGCGGCAC 2551 Query 24814 TTGGACTTCTTTCTCAGAACCCCCGTCAGTCTGGATCACCATACCGAGTTTACGGTCGTC 24873 || | ||| || | ||| || || || | || ||||| ||||||||||| || || Sbjct 2552 CTGAATTTCAGTCGGCGTACCGCCTTCCGTGTTGACCACCAGCCCGAGTTTACGATCATC 2611 Query 24874 TAAGTCCCCTTTACGGGCATACGCAATCACCGACACGCCGAAAACC---TTATTGTT 24927 | ||| ||||||||||| ||||| || || |||||| |||| | | |||||||| Sbjct 2612 AAGGTCGCCTTTACGGGCGTACGCGATGACGGACACGGCGAAGATCTGGTTATTGTT 2668 >seq49361 Length=6738 Score = 93.3 bits (102), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 24694 CCCCTATCGAGTCACGATGCCGAACTGCAATGCTTCGACAGCGCCTTTATTCCAGTCGGT 24753 ||| |||||||| | ||||||||| ||||| | |||||| | | |||||||| | Sbjct 1593 CCCTTATCGAGTGATGATGCCGAATTGCAAAGATTCGACGTTGTTCTGGTTCCAGTCACT 1652 Query 24754 ATTACCCGGAGTTTGTTCGTGGGTAACTTGGTAGTATTTATAGTCTTCGGTCAATGGTAC 24813 ||||| | ||| ||| | | || || || || || ||||| | || || Sbjct 1653 TCCGCCCGGCGCTTGCTCGAACGATGCCTGATAATACTTGTACGACTCGGTGAGCGGCAC 1712 Query 24814 TTGGACTTCTTTCTCAGAACCCCCGTCAGTCTGGATCACCATACCGAGTTTACGGTCGTC 24873 || | ||| || | ||| || || || | || ||||| ||||||||||| || || Sbjct 1713 CTGAATTTCAGTCGGCGTACCGCCTTCCGTGTTGACCACCAGCCCGAGTTTACGATCATC 1772 Query 24874 TAAGTCCCCTTTACGGGCATACGCAATCACCGACACGCCGAAAACC---TTATTGTT 24927 | ||| ||||||||||| ||||| || || |||||| |||| | | |||||||| Sbjct 1773 AAGGTCGCCTTTACGGGCGTACGCGATGACGGACACGGCGAAGATCTGGTTATTGTT 1829 >seq49359 Length=5885 Score = 93.3 bits (102), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 24694 CCCCTATCGAGTCACGATGCCGAACTGCAATGCTTCGACAGCGCCTTTATTCCAGTCGGT 24753 ||| |||||||| | ||||||||| ||||| | |||||| | | |||||||| | Sbjct 740 CCCTTATCGAGTGATGATGCCGAATTGCAAAGATTCGACGTTGTTCTGGTTCCAGTCACT 799 Query 24754 ATTACCCGGAGTTTGTTCGTGGGTAACTTGGTAGTATTTATAGTCTTCGGTCAATGGTAC 24813 ||||| | ||| ||| | | || || || || || ||||| | || || Sbjct 800 TCCGCCCGGCGCTTGCTCGAACGATGCCTGATAATACTTGTACGACTCGGTGAGCGGCAC 859 Query 24814 TTGGACTTCTTTCTCAGAACCCCCGTCAGTCTGGATCACCATACCGAGTTTACGGTCGTC 24873 || | ||| || | ||| || || || | || ||||| ||||||||||| || || Sbjct 860 CTGAATTTCAGTCGGCGTACCGCCTTCCGTGTTGACCACCAGCCCGAGTTTACGATCATC 919 Query 24874 TAAGTCCCCTTTACGGGCATACGCAATCACCGACACGCCGAAAACC---TTATTGTT 24927 | ||| ||||||||||| ||||| || || |||||| |||| | | |||||||| Sbjct 920 AAGGTCGCCTTTACGGGCGTACGCGATGACGGACACGGCGAAGATCTGGTTATTGTT 976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186084651523192