Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3299 187 2e-42 >seq3299 Length=266545 Score = 187 bits (206), Expect = 2e-42 Identities = 138/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||| Sbjct 77551 GATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 77610 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||| | || ||||| |||||||||||||| | || ||||| ||| Sbjct 77611 GGTGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 77670 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 77671 AACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 77711 Score = 187 bits (206), Expect = 2e-42 Identities = 138/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 77711 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 77652 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| ||||| || | ||||||||||||||| |||||| | |||||||| ||| Sbjct 77651 ATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCACCATTCACCACGTAGAACTGG 77592 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| |||||||| ||||| ||||||||||| Sbjct 77591 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATC 77551 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | ||||| || || ||| ||| ||||| || ||||| || ||||||| | Sbjct 75028 CCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCCC 75087 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 ||||||| |||| | ||| ||| ||| | | | |||| || || ||||| || Sbjct 75088 GAGACTTCTTGGATGGCCTGGGCTTCTCCAACAGAGCTGAAGGG-GATTTAGGCCCAGTT 75146 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || ||||||||||| || |||||||| || || Sbjct 75147 TATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 75181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || ||||| || || |||| | | Sbjct 75181 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC-CCCTTCAGC 75123 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||| ||| ||| | |||| |||||||| ||||||| || ||||| || || Sbjct 75122 TCTGTTGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTT 75063 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| ||| ||| || || ||||| | ||| |||| Sbjct 75062 CACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 75028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445386925579440