Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq9486 187 2e-42 seq13021 104 2e-17 seq8814 100 2e-16 >seq9486 Length=320400 Score = 187 bits (206), Expect = 2e-42 Identities = 212/282 (75%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 1250 TTCTATTAAG-TGTTTTTTAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAG 1308 |||| ||||| |||| | | ||| || || |||||| | ||||| |||||||||||| Sbjct 9504 TTCT-TTAAGATGTTCTCTGCAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAA 9446 Query 1309 TTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTC 1368 | || || |||||||||||||||| ||| | || | |||| |||||||| || | Sbjct 9445 TCAAGGCTGTAAGCCCAGAAAACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCC 9386 Query 1369 AGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAA 1428 |||| || ||||| || || || || || || |||| ||||| ||| |||| || | Sbjct 9385 AGCCTGCCTACAAGGACAAGATAAATATCACCCAGCTGGGACTCATGAACTCAACCATTA 9326 Query 1429 CCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTG 1488 |||||||||| || || ||||| ||||| | ||| |||||||| | ||||| || |||| Sbjct 9325 CCTTCTGGAATACCACCTTGGAGGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTG 9266 Query 1489 GATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCTTTTTG 1530 | ||||| ||||| |||||||||| || || || || |||| Sbjct 9265 GTTCTGGAAAGATCTCAGGAATAGCCTGCCTCACTCTCTTTG 9224 >seq13021 Length=168566 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 143845 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 143786 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||| || || |||||||| | | || | |||| || |||| | Sbjct 143785 TTCGGAGGGGTCATGTGCGTAGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 143726 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 143725 ATCGCCCTGTGGATGACCGA 143706 >seq8814 Length=891778 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2524 CTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAAT 2583 || ||| | |||||||| |||| |||||||| |||| |||| || ||||||||| || Sbjct 339763 CTATTTGTGACAAGGATCACGCAAGAATTTGAAAGTGACACATTTTTTCCAGAAATTGAT 339822 Query 2584 CTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAA 2643 | ||||| |||| || | |||| ||||| | |||| |||| | || || ||| Sbjct 339823 TTGGAAAAATATAAACTTCTCCCAGAATATCCAGTTATTCCTTCTGATATTCAGGAGGAA 339882 Query 2644 AATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || || |||| ||||||||||| |||||||||| || Sbjct 339883 AAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAA 339920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411884519227828