Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq311227 100 2e-16 seq11610 100 2e-16 seq2312 100 2e-16 seq59220 96.9 2e-15 seq2274 96.9 2e-15 seq17057 91.5 1e-13 seq101 91.5 1e-13 seq512960 87.8 1e-12 seq13283 87.8 1e-12 seq2656 87.8 1e-12 >seq311227 Length=303 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23626 AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AAT 23684 ||||| | || |||||||| || || | ||||| || | | ||||| | || ||| Sbjct 1 AAAACTTTGACCGGAAAAACAATAACCTTGGAAGTAGAACCATCAGACACAATAGAGAAT 60 Query 23685 ATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATT 23744 | ||| |||| | | || || ||||| | || |||||||| || ||||||||||| Sbjct 61 GTGAAAGCAAAGA-TCCAAGATAAGGAAGGAATTCCACCAGATCAGCAACGTTTAATATT 119 Query 23745 TGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTC 23804 ||| || ||||| | ||||| | | | || | |||| ||||| || |||||||| Sbjct 120 TGCTGGTAAACAGTTAGAAGATGGAAGAACACTGAGCGACTACAATATCCAAAAAGAAAG 179 Query 23805 CACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| | |||||||| ||||| || |||||||| Sbjct 180 TACACTCCATTTAGTATTAAGACTGAGAGGAGGA 213 >seq11610 Length=252271 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||||| || || ||||| |||||||| || || || | | Sbjct 43782 AATGCAGATCTTTGTAAAAACCCTGACTGGTAAAACCATCACTCTGGAGGTGGAGCCTAG 43723 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || || |||||||| | || ||||| || Sbjct 43722 TGACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAAGGCATCCCTCCAGACCA 43663 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| |||||||| |||||||| | ||||| | || ||||| Sbjct 43662 GCAGAGGTTGATCTTTGCAGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 43603 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 43602 CATCCAGAAAGAGTCCAC 43585 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 43553 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 43494 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || ||||| || Sbjct 43493 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAGGGCATCCCCCCAGACCA 43435 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || ||||| |||||||| | ||||| | || ||||| Sbjct 43434 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 43375 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 43374 CATCCAGAAAGAGTCCAC 43357 >seq2312 Length=925560 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| || || || || ||||||||||| || || || Sbjct 16415 AAGATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTGGAGCCC 16474 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || |||| |||| ||||| || || ||||| | || | | Sbjct 16475 TCGGATACAACAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTTCTTAC 16534 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || || || ||||| ||||||||||| | ||| ||||| || ||| Sbjct 16535 CAGCAAAGACTGATCTTAGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 16594 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| |||| || || Sbjct 16595 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAG 16632 >seq59220 Length=24887 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || ||| | || || || | ||||||||||| | || || Sbjct 14845 AAGATGCAGATTTTTGTGAAGACCGTGACAGGGAAGATCATCACTCTCGAGTTCGAGCCC 14904 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || |||||||| | || || || Sbjct 14905 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAC 14964 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 | || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 14965 TAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 15024 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| |||| || || Sbjct 15025 AACATTCAAAATGAGTCCACTCTTCATCTAGTGTTGAG 15062 >seq2274 Length=301413 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || ||||| ||| ||||| ||||||||||| || | || Sbjct 270662 AAGATGCAGATTTTTGTGAAGACCCTGACGAAGAAAACCATCACTCTCGAGGTCAAGCCC 270603 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || || || |||||||| | || || || Sbjct 270602 TAGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAC 270543 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||| | ||||| ||||||||||| | || ||||| || ||| Sbjct 270542 CAGCAAAGACTGATCTTTCCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 270483 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| |||| || || Sbjct 270482 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAG 270445 >seq17057 Length=148899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||||| || || || || ||||| || || || || || Sbjct 116992 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 117051 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || || ||||| | || || || Sbjct 117052 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGAC 117111 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||||||||| || |||||||| | |||||| | |||||| Sbjct 117112 CAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 117171 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 117172 AACATCCAGAAAGAGTCTAC 117191 >seq101 Length=221765 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| | ||| || || |||| |||| | ||||| || Sbjct 70808 AAGATGCAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCATTCTCAAGGTTGAGCCC 70749 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || |||| |||| || || || || ||||| | || || || Sbjct 70748 TTGGATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGGATTCCTCCTGAC 70689 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | | | ||||| || ||| Sbjct 70688 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 70629 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||| |||| | ||| |||| || || Sbjct 70628 AACATTCAAAAGGAGCCCACTCTTCATCTAGTGTTGAG 70591 >seq512960 Length=5958 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || || || ||||| || || ||||||||||| || | || Sbjct 4325 AAGATGCAGATTTTTGTGAAGACTCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCC 4384 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || | || ||||| | || | || Sbjct 4385 TCAGATACCATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGAC 4444 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| |||||| |||| | ||| ||||| || ||| Sbjct 4445 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGCAAGATGGACGTACTTTGTCTGACTAC 4504 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| || ||| | || || || Sbjct 4505 AACATTCAAAAGGAGTCCACTTTTCATCTTGTGTTGAG 4542 >seq13283 Length=25003 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || || || ||||| || || ||||||||||| || | || Sbjct 7020 AAGATGCAGATTTTTGTGAAGACTCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCC 7079 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || | || ||||| | || | || Sbjct 7080 TCAGATACCATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGAC 7139 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| |||||| |||| | ||| ||||| || ||| Sbjct 7140 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGCAAGATGGACGTACTTTGTCTGACTAC 7199 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| || ||| | || || || Sbjct 7200 AACATTCAAAAGGAGTCCACTTTTCATCTTGTGTTGAG 7237 >seq2656 Length=305558 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || ||||| | ||| || || |||||||| || || || || Sbjct 78622 AAGATGCAGATTTTTGTGAAGACCCTGATGGGGAAGACCATCACTCTTGAGGTCGAGCCC 78681 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || | || || ||||| | || || || Sbjct 78682 TCGGATACAATAGAAAATGTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGAC 78741 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||| ||||| | | | ||||| || ||| Sbjct 78742 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTAGAAGATGGATGTACTTTGTCTGACTAC 78801 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| |||||||| | ||| |||| || || Sbjct 78802 AATATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAG 78839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335895571453916