Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3299 138 9e-28 seq3637 91.5 1e-13 >seq3299 Length=266545 Score = 138 bits (152), Expect = 9e-28 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||||| || Sbjct 77717 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCC 77658 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || |||||||| || |||| ||||| | |||||| || ||||| || | |||||| Sbjct 77657 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCACCATTCACCACGTAG 77598 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| || | ||| ||||| || || |||||||||||| Sbjct 77597 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGA 77559 >seq3637 Length=615562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 195980 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 195921 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| |||||||||||||| ||||||| ||||| |||||| Sbjct 195920 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 195873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403622915347822