Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq197 113 4e-20 seq3779 100 2e-16 seq4890 89.7 4e-13 seq9206 87.8 2e-12 >seq197 Length=217379 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 121519 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 121460 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| |||||||| || |||||||| ||| Sbjct 121459 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 121400 Query 4692 AC 4693 || Sbjct 121399 AC 121398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || |||||||||||||||||||| ||||| || ||| Sbjct 119556 TCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 119497 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||||| || | |||||||| Sbjct 119496 ATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTC 119453 >seq3779 Length=235686 Score = 100 bits (110), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || |||||||| ||||| || || | ||||| |||||||| || || |||||| Sbjct 29145 GTGAAAACCGACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGGAGAGAAGCTCCACAT 29086 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 |||| |||||| ||||| || | || || || || |||| |||||| ||| ||| Sbjct 29085 TCTGACTTGGCA---AAACATTTCACAGAGGTAGGAGCTGGTGCCATAGATGAAGATTAT 29029 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAA 31948 |||||| ||||| |||| ||||||||||||| |||||| | | || | ||| Sbjct 29028 AGAGGAGTTGTTGGTGTTGTTCTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TCAAA 28972 Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||||| ||| | | || ||||| ||||| ||| Sbjct 28971 AAGGGTGATTGAATTGCACAACTTATTTGTGAA 28939 >seq4890 Length=280387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || || ||||| || || || || ||||||||||||||||| || || | ||||| ||| Sbjct 123296 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATA 123237 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | ||||| || |||||||| || | ||| || | ||||||||| Sbjct 123236 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 123178 >seq9206 Length=396832 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 7/165 (4%) Strand=Plus/Plus Query 31773 TTAAAACCGATATTCAAAT--TTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830 |||||||| | ||||| || ||||| ||||| |||||||| ||| || ||||||| Sbjct 43389 TTAAAACCAACATTCAGATAGTTCTT--CCTTCTGGGTGCTATGGAAGAGTAGCTCCACA 43446 Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 | ||| | || ||| ||| | || ||||| | ||| |||||||| || ||| Sbjct 43447 TTTTGGCTAAGCTACAAAATACTCCACAGATGTGGGAGATGGTATTATAGATGAAGGCTA 43506 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 | ||||||| ||||| |||| ||||||||||||| |||||| Sbjct 43507 TGGAGGAAATGTTGGTGTTGTAATGTTTAATTTTGGCAAAGAAAA 43551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424378684602941