Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq52311 316 3e-81 seq8207 132 7e-26 seq4890 107 3e-18 seq197 107 3e-18 seq4322 87.8 3e-12 >seq52311 Length=1231 Score = 316 bits (350), Expect = 3e-81 Identities = 665/983 (68%), Gaps = 20/983 (2%) Strand=Plus/Minus Query 76274 GCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCC 76333 |||| ||||||| |||||| || |||| |||| ||| | | |||||| ||| || Sbjct 1182 GCTACTGATGCTAAATTACATACTGCTATTTCATCTTTATTTGTAAATTGTACTATTTCA 1123 Query 76334 GTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACAT 76393 |||| |||||| | || || ||||| | ||||| ||| || || ||| |||||| Sbjct 1122 CAACATAAATTACTTGATTTTATTGTTCCTAAATTTTTTTGATTACTTTTTGCATTACAT 1063 Query 76394 GAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTC 76453 | || ||||| | | | | || ||||| ||||| || ||||||| ||||| || Sbjct 1062 GCATCTTTATATAACATATATGGTGTTCCTGTTTCTATTTGTGATTG--TAATA---TTG 1008 Query 76454 CAGACGACTCTAGCTTTTAT-----TATAGATTTGTATCGCTTCTCTCTTTC---ATATT 76505 || || | || |||| | || | ||| || | | || |||| ||||| Sbjct 1007 CAAACCA---TAATTTTTGTGCTGGTACTGTTTTACGTCCCATTCCTTTTTCTTCATATT 951 Query 76506 GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCG 76565 || |||||| |||||||| |||||||| || |||| || || |||||||| | Sbjct 950 GTTCATATAATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCTG 891 Query 76566 GACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCC 76625 ||||||| |||| ||| | || | | | || | ||||||||| | ||| ||||||| Sbjct 890 GACACATTAATGTCCATTGTTTATTTGCTTCTACTCTTTTCATAAATAAATCTGGTATCC 831 Query 76626 ATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGAT 76685 ||| ||| ||||| ||||| | ||| ||||||| || ||| ||| | | || Sbjct 830 ATAATGCATAAAATAAATCTCTTGCTCTTAAATCTTCATGACCATGATTTTTTCTTAAAT 771 Query 76686 CTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTC 76745 ||| | | | ||||| | |||||||||||||| |||||| || | |||| || Sbjct 770 CTAAAAGTTTAAATATATCTGCATGCCATGGTTCTAAATATATTGCAAATGAACCCTTTC 711 Query 76746 GTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAA 76805 ||| |||||| || |||| ||| | ||||| |||| | | | | |||||||| | Sbjct 710 TTTTTCCACCTCCTTGGTCTACATACTTTGCAGTTGAATTAAATATTTTTAACATTGGTA 651 Query 76806 TAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTAC 76865 || || |||||| | ||||| ||||| |||||| ||||| ||| | ||| ||| Sbjct 650 CTATTCCATTAGATATTCCATTAGTTCCTCTAATATATGATCCACTTGCTCTAATTTTAT 591 Query 76866 TAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGT 76925 |||||||| || ||||||||||| ||| || | ||||| |||| ||||| Sbjct 590 GAATAGATAATCCAATTCCTCCTGCACACTTACTTATAAATGCACATTGTTTTAATGTTG 531 Query 76926 CATAGATGCCCTCTATACTATCATCCATCATGT-TAAGAAGAAAACAGCTAGACATTTGA 76984 || | || || |||| |||||| ||| | ||| || |||||| |||||||| Sbjct 530 CAAATATTCCTTCTAATGAATCATCTTGCATATCTAATAA-AAAACATGATGACATTTGT 472 Query 76985 TGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAA 77044 ||| || || | |||||| ||||| || | |||||| || || || ||| | Sbjct 471 GGATTTTTTGTACCAGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATCTTTGACTC 412 Query 77045 AGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACA-GCGAC 77103 | || ||| ||||||| || | ||||| || | ||| ||||| ||| | || Sbjct 411 ATTAAATTATATGTTTGTATTGTTTTTTCTAAATTTCCACAATGTATTCC-ACATGATAC 353 Query 77104 ACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGA 77163 | ||| |||||||| || |||| |||| | | || ||||| | | || || ||||| Sbjct 352 TCTCATTAACATATGTTGTGGTCTTTCTGCTATTTTTCCATTTACTCTTAATAAATATGA 293 Query 77164 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAAC 77223 | |||| || |||||||| |||||||| | ||| ||| ||||||| ||| || | Sbjct 292 TCTTTCTAATGTTTTAAATCCAAAATAATCATATTGAAAATCTCTTTTATAATCTATTGC 233 Query 77224 CGAATTTAGTTTGTCCTTATATT 77246 ||||| ||| || |||| || Sbjct 232 TTGATTTAATTTTTCTTTATTTT 210 >seq8207 Length=439286 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 388241 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 388182 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 388181 TCATTATTTCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 388122 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 388121 TTTCTTATACCAT 388109 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| || ||||| ||||| | || || ||||| ||||| || || || || Sbjct 363038 CTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCAGGATG 362979 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| | || || || |||||||| | | Sbjct 362978 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCAGT 362919 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | |||||| || || | |||| ||||| || |||||||||| Sbjct 362918 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 362873 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 367339 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 367280 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 367279 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 367220 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || |||| ||| Sbjct 367219 ATGTGTTGTGGTCTTTC 367203 >seq4890 Length=280387 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | || || ||||| ||||| |||||||| ||||| | || | Sbjct 127885 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 127826 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 127825 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 127766 Query 46772 CGAC 46775 | || Sbjct 127765 CCAC 127762 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||||| ||||||||| ||||| || ||| | Sbjct 118602 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGG 118543 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 118542 GTACTGGATTGGAAAGATGACAAATC 118517 >seq197 Length=217379 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| ||||| | ||| || ||||| ||||| |||||||| ||||| || || ||| Sbjct 121519 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 121460 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| |||||||| || || || || || Sbjct 121459 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 121400 Query 46774 AC 46775 || Sbjct 121399 AC 121398 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 119557 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 119498 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| | ||||| |||||||| || ||| Sbjct 119497 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 119452 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/138 (74%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| |||||| |||| || | ||| ||| ||| | |||||| |||||||| | Sbjct 123129 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATCCT 123070 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 123069 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 123010 Query 46401 CATAAAATCAAACGGATT 46418 |||||| ||||| ||||| Sbjct 123009 CATAAAGTCAAATGGATT 122992 >seq4322 Length=1411486 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 44359 TCAATCCCGTTGATCCAAATCCTTGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTT 44418 ||| ||| || || ||||| ||| | || || | || |||||| | ||| || | Sbjct 206272 TCATTCCGGTGGAACCAAAACCTCCTGAATCCCTTTCAGTGTTATCTAAAACTTGAACAT 206331 Query 44419 CCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTAT 44478 |||||| ||||||||| |||| ||| | | || || || || || |||||| | | Sbjct 206332 CCTCTATTTCAGGATAAAATATCTGTTCACAAATGAGCTGTGCAGTTTGATCACCCTTTT 206391 Query 44479 TTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAAT 44538 | | || |||| | ||||| || ||| | | || |||||| | || ||||||| Sbjct 206392 TGACTTCAAAGCTTTCTTTGTCAAAATTACATAGTACAACACCAATGCTTCCTCTATAAT 206451 Query 44539 CTTCATCTATTACTCCACCTCCCACA 44564 |||||||||| || ||| |||||||| Sbjct 206452 CTTCATCTATGACACCAGCTCCCACA 206477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708361130792640