Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq11610 140 7e-28 seq17057 123 6e-23 seq512960 114 3e-20 seq13283 114 3e-20 seq2656 114 3e-20 seq2312 114 3e-20 seq311227 93.3 1e-13 seq59220 93.3 1e-13 seq2274 93.3 1e-13 seq101 93.3 1e-13 seq332959 91.5 3e-13 seq3115 89.7 1e-12 seq34337 87.8 4e-12 >seq11610 Length=252271 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| || | | || Sbjct 43561 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 43620 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||| || || ||||| | |||||||||||| | | ||| ||| Sbjct 43621 CGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCT 43680 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || |||||||| || || |||||| |||| | | |||| | ||| || || ||| Sbjct 43681 TCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGA 43740 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || || || || || |||| ||||||| Sbjct 43741 GTGATGGTTTTACCAGTCAGGGTTTTTACAAAGATCTGCATT 43782 Score = 134 bits (148), Expect = 3e-26 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| || | | || Sbjct 43333 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 43392 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || |||||| || ||||| | |||||||||||| | | ||| || Sbjct 43393 CGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCC 43452 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 43453 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCC 43509 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || | ||||||||||||| |||||| Sbjct 43510 AGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43553 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || |||||||||||||| ||||||||||| || | | || | ||||||| Sbjct 43114 AGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 43173 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| || ||||| | |||||||||||| | | ||| || ||||| ||| Sbjct 43174 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 43233 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 43234 TGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 43290 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||||||||||||| |||||| Sbjct 43291 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43325 >seq17057 Length=148899 Score = 123 bits (136), Expect = 6e-23 Identities = 159/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || ||||||||||| |||||||||||||| | | ||| | |||||| Sbjct 117206 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 117147 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||| ||||||||| | | || |||||||| || Sbjct 117146 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 117087 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 117086 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 117030 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || ||||||||||||| |||||||| Sbjct 117029 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 116992 >seq512960 Length=5958 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||| ||| ||||| ||||| |||||||| || | ||||| | Sbjct 4545 AGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 4486 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||| || || || || ||||| || || |||||||| | ||||||||| Sbjct 4485 CCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGAATTCCTTCC 4426 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || | || || || || ||| | |||| | | ||||| || || || ||||| Sbjct 4425 TTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACCTCGAGAGTG 4366 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| ||||||||||| || | |||||| || Sbjct 4365 ATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 4325 >seq13283 Length=25003 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||| ||| ||||| ||||| |||||||| || | ||||| | Sbjct 7240 AGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 7181 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||| || || || || ||||| || || |||||||| | ||||||||| Sbjct 7180 CCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGAATTCCTTCC 7121 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || | || || || || ||| | |||| | | ||||| || || || ||||| Sbjct 7120 TTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACCTCGAGAGTG 7061 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| ||||||||||| || | |||||| || Sbjct 7060 ATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 7020 >seq2656 Length=305558 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| ||||| || ||||| || | ||||| | Sbjct 78842 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACAT 78783 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| || || || ||||| || || |||||||| | | ||||||||| Sbjct 78782 CCATCTTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 78723 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || | || || ||| | |||| | || || ||| || |||||||| Sbjct 78722 TTATCCTGGGTCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTG 78663 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||| | || |||||||| || | |||||| || Sbjct 78662 ATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCATCTT 78622 >seq2312 Length=925560 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 16635 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 16576 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || ||||||| | | ||||||||| Sbjct 16575 CCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGGAATTCCTTCC 16516 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || ||||| || ||| | ||| | || || ||| || || ||||| Sbjct 16515 TTATCCTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTCGAGAGTG 16456 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || ||||||||||| | |||||| || Sbjct 16455 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 16415 >seq311227 Length=303 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | ||| || ||| ||||||||||| ||||| ||| | ||| Sbjct 206 CTCAGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGCTCAGTGTT 147 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||||| ||| || || || || | | ||||| || | | |||||| Sbjct 146 CTTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCT 87 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || ||| ||| ||| |||||| ||||||| |||||||| | Sbjct 86 TCCTTATCTTGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCTACTTCCAAG 27 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTT 152089 || || ||||| || || | ||| || Sbjct 26 GTTATTGTTTTTCCGGTCAAAGTTTT 1 >seq59220 Length=24887 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 15065 AGTCTCAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGACAAAGTACGT 15006 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || |||| ||| | | |||||||| Sbjct 15005 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCT 14946 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| | || || ||| | || ||||| Sbjct 14945 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAACTCGAGAGTG 14886 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || | || || || | |||||||| || | |||||| || Sbjct 14885 ATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCATCTT 14845 >seq2274 Length=301413 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| ||||| |||||||| || | ||||| Sbjct 270442 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 270501 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || | ||||| || || |||||||| | | |||||||| Sbjct 270502 CCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCT 270561 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| | || | || || || ||||| Sbjct 270562 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGACCTCGAGAGTG 270621 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| ||| || |||||||| || | |||||| || Sbjct 270622 ATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCATCTT 270662 >seq101 Length=221765 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| | ||| ||||| |||||||| || | ||||| | Sbjct 70588 AGTCTCAACACTAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 70647 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || |||||||| | | || |||||| Sbjct 70648 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATCCCTTCC 70707 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | ||| | || | ||| || | ||| | Sbjct 70708 TTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGCTCAACCTTGAGAATG 70767 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||| | || ||||||||||| | |||||| || Sbjct 70768 ATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCATCTT 70808 >seq332959 Length=315 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || || |||||||| |||||||||||||| | | ||| Sbjct 140 CCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 199 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || ||||| ||||| |||| ||||||||| | | || || Sbjct 200 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCC 259 Query 152003 TTCCTTTTCTTGAATTTT 152020 |||||| || || || || Sbjct 260 TTCCTTATCCTGGATCTT 277 >seq3115 Length=1228732 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||||||||| | || |||| ||||||| || | ||||| | |||||||| Sbjct 1131613 ACAAGATGAAGAGTGGGCTGCTTTTCAGTGTTGTAGTCAGACAAAGTACATCCATCTTCC 1131672 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||| || || |||||||| | || ||||||||||| || || Sbjct 1131673 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGAAATTCCTTCCTTATCCTGG 1131732 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || ||| | |||| | || || ||| || || | ||| || || | Sbjct 1131733 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCGATAGTGATGGTCTCC 1131792 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || ||||||| ||| | |||||| || Sbjct 1131793 ACTGTTAGGGTCTTCATGAAAATCTGCATCTT 1131824 >seq34337 Length=37708 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || ||||||||||| |||||||||||||| | | ||| | |||||| Sbjct 144 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 85 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||| ||||||||| | | || |||||||| || Sbjct 84 TCCAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 25 Query 152013 TGAATTTT 152020 || || || Sbjct 24 TGGATCTT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146234335573767