Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4890 107 2e-18 seq297100 98.7 1e-15 seq4314 96.9 4e-15 seq7677 87.8 2e-12 seq6551 84.2 2e-11 seq3871 84.2 2e-11 seq2104 84.2 2e-11 seq6524 82.4 8e-11 seq197 82.4 8e-11 >seq4890 Length=280387 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 127885 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 127826 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 127825 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 127766 Query 23651 CCAC 23654 |||| Sbjct 127765 CCAC 127762 >seq297100 Length=295 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 23677 TTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 |||| || | ||||||||| |||| ||||||||| || || || || |||||| Sbjct 1 TTATCTTCCGTAATCCATTTCTTTGCCCAATTAGCTTTATCCTTCACTGCATCTATTGTT 60 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 || ||||| | || | |||| || | | |||| ||||||| | || || | | Sbjct 61 TCTATTGCCATAAACAATCTCATTTTCTCATTTTCATCTTTTATATAATTCTCTATCAAT 120 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCT- 23855 |||||||| | ||||||||||| ||||| | || || ||||| || |||| ||| Sbjct 121 AAACTATATGTCTCAGAATGAATGTTTTCCACTGCGATTTGAAATGAGTAGAAAC-TCTG 179 Query 23856 AGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACC 23915 |||||||| | | ||||| ||| |||| | ||||||||||| |||||| || Sbjct 180 AGCTTCAGGAACCTTCACATCTCTAAGAAATTTGAGTGCTAAATTTTCCAAAACAATTCC 239 Query 23916 ATCACT 23921 ||||| Sbjct 240 GTCACT 245 >seq4314 Length=265014 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| | | |||||| || |||| |||||||||||| ||||| Sbjct 169900 GCGCACTGCAGCCCAGAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 169841 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTG 8489 |||||||||||||||| |||||| |||| |||| ||||||| Sbjct 169840 GCTGGGATTACAGGCACGCGCCACCGCGCCCAGCTTATTTTTG 169798 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||| | ||||||||||||||| Sbjct 169885 GAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC 169826 Query 8597 ATGAGCCACCGCGCC 8611 | | ||||||||||| Sbjct 169825 ACGCGCCACCGCGCC 169811 >seq7677 Length=638174 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| | | |||||| || |||| |||||||||||| ||||| Sbjct 441901 GCGCACTGCAGCCCAGAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 441960 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTA 8497 |||||||||||||||| |||||| |||| |||| ||||||| ||| Sbjct 441961 GCTGGGATTACAGGCACGCGCCACCGCGCCCGGCTACAGCTTGTATTCTTA 442011 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||| | ||||||||||||||| Sbjct 441916 GAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC 441975 Query 8597 ATGAGCCACCGCGCCTGGC 8615 | | ||||||||||| ||| Sbjct 441976 ACGCGCCACCGCGCCCGGC 441994 >seq6551 Length=132490 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||| | ||||||||||||||| Sbjct 127484 GAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC 127543 Query 8597 ATGAGCCACCGCGCCTGGC 8615 | | ||||||||||| ||| Sbjct 127544 ACGCGCCACCGCGCCCGGC 127562 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| | | |||||| || |||| |||||||||||| ||||| Sbjct 127469 GCGCACTGCAGCCCAGAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 127528 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 |||||||||||||||| |||||| |||| Sbjct 127529 GCTGGGATTACAGGCACGCGCCACCGCGCC 127558 >seq3871 Length=281268 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||| | ||||||||||||||| Sbjct 139194 GAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC 139135 Query 8597 ATGAGCCACCGCGCCTGGC 8615 | | ||||||||||| ||| Sbjct 139134 ACGCGCCACCGCGCCCGGC 139116 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| | | |||||| || |||| |||||||||||| ||||| Sbjct 139209 GCGCACTGCAGCCCAGAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 139150 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 |||||||||||||||| |||||| |||| Sbjct 139149 GCTGGGATTACAGGCACGCGCCACCGCGCC 139120 >seq2104 Length=420514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||| | ||||||||||||||| Sbjct 47144 GAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC 47203 Query 8597 ATGAGCCACCGCGCCTGGC 8615 | | ||||||||||| ||| Sbjct 47204 ACGCGCCACCGCGCCCGGC 47222 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| | | |||||| || |||| |||||||||||| ||||| Sbjct 47129 GCGCACTGCAGCCCAGAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 47188 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 |||||||||||||||| |||||| |||| Sbjct 47189 GCTGGGATTACAGGCACGCGCCACCGCGCC 47218 >seq6524 Length=606467 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| |||||||||| | |||| |||||||||||| ||||||||| ||||||||| | Sbjct 143224 CTCCTGGGTTCAAGCAGTCCTCCAGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGTGTA 143283 Query 8465 AGCCACCACGCCAAGCTAAT 8484 ||||||| ||| |||| || Sbjct 143284 TGCCACCATGCCCAGCTGAT 143303 >seq197 Length=217379 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | || || |||||||| || | |||||||||||||||||| || ||||| || || Sbjct 119557 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 119498 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||| || || ||||| ||||| | ||||| Sbjct 119497 AATTTGGAAGCCATAGAAACAACGGGCTTC 119468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518142804407800