Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq17057 143 2e-29 seq11610 129 4e-25 seq2312 109 4e-19 seq512960 96.9 2e-15 seq311227 96.9 2e-15 seq13283 96.9 2e-15 seq2656 96.9 2e-15 seq101 96.9 2e-15 seq332959 95.1 9e-15 seq59220 87.8 1e-12 seq2274 84.2 2e-11 >seq17057 Length=148899 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || || ||| || |||||||||||||| | Sbjct 117221 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 117162 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||||||||| | |||||||| || | || Sbjct 117161 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 117102 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| ||||| |||| | |||||||| || ||||| Sbjct 117101 ATGCCTTCCTTATCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCACTGGGCTCCAC 117043 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| || || ||||||||||||||||||||||| Sbjct 117042 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 116995 >seq11610 Length=252271 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| || Sbjct 43323 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 43382 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| ||||| ||||||||||| | |||||| |||| Sbjct 43383 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGG 43442 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || ||||| ||| | | | |||||||| || || Sbjct 43443 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 43502 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || | ||||||||||||||| ||||| Sbjct 43503 CACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43553 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| || Sbjct 43551 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 43610 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| || || ||||||||||| | |||||| |||| Sbjct 43611 AGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGG 43670 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||| ||||| |||||| ||| | | | |||||||| | || Sbjct 43671 AGGGATGCCTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTC 43730 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || || || || || ||||| || || ||||| ||||| Sbjct 43731 CACCTCCAGAGTGATGGTTTTACCAGTCAGGGTTTTTACAAAGATCTGCAT 43781 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| | || |||| ||| || || ||| || ||||||||||| || | Sbjct 43099 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 43158 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || |||||||| ||||| ||||||||||| | |||||| |||| || Sbjct 43159 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 43218 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| || ||||| ||| | | | |||||||| || |||||| Sbjct 43219 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 43278 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || | ||||||||||||||| ||||| Sbjct 43279 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43325 >seq2312 Length=925560 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | || Sbjct 16635 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 16576 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || || ||||||| | ||||| | ||||| | |||||| Sbjct 16575 CCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGGAATTCCTTCC 16516 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| || || ||| | || || | || || | || |||||||| | || Sbjct 16515 TTATCCTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTCGAGAGTG 16456 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || |||||||||||||| || ||||| Sbjct 16455 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 16418 >seq512960 Length=5958 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || |||| ||| ||||||||| |||||||| || | | || Sbjct 4545 AGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 4486 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || | ||| ||||| || |||||||||| | ||||| || ||| | |||||| Sbjct 4485 CCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGAATTCCTTCC 4426 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || | | ||||| ||| | || ||||||| || | || | ||||| | || Sbjct 4425 TTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACCTCGAGAGTG 4366 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| || |||||||| || || ||||| Sbjct 4365 ATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCAT 4328 >seq311227 Length=303 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| ||||||||||| || || | || || || || || |||||||| || Sbjct 222 TATTTGCATTCCTCCTCTCAGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATT 163 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| ||| ||| | | || || | ||| || || ||||| || ||||| ||||| Sbjct 162 GTAGTCGCTCAGTGTTCTTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTG 103 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 ||||| || | |||||||| || ||||| ||||| | ||| |||| ||||| | Sbjct 102 ATCTGGTGGAATTCCTTCCTTATCTTGGATCTT-TGCTTTCACATTCTCTATTGTGTCTG 44 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | ||| || |||| || || || ||||| || Sbjct 43 ATGGTTCTACTTCCAAGGTTATTGTTTTTCCGGT 10 >seq13283 Length=25003 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || |||| ||| ||||||||| |||||||| || | | || Sbjct 7240 AGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 7181 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || | ||| ||||| || |||||||||| | ||||| || ||| | |||||| Sbjct 7180 CCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGAATTCCTTCC 7121 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || | | ||||| ||| | || ||||||| || | || | ||||| | || Sbjct 7120 TTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACCTCGAGAGTG 7061 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| || |||||||| || || ||||| Sbjct 7060 ATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCAT 7023 >seq2656 Length=305558 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| || ||||| || | | | Sbjct 78842 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACAT 78783 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || || ||||| || |||||||||| | ||||| || | ||| | |||||| Sbjct 78782 CCATCTTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 78723 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| |||| ||| | || |||| || || | || || ||||| | || Sbjct 78722 TTATCCTGGGTCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTG 78663 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||| | ||||||||||| || || ||||| Sbjct 78662 ATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCAT 78625 >seq101 Length=221765 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | | Sbjct 70588 AGTCTCAACACTAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 70647 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | ||||| || | ||| | |||||| Sbjct 70648 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATCCCTTCC 70707 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || || | || || || || |||| | | Sbjct 70708 TTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGCTCAACCTTGAGAATG 70767 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||| | |||||||||||||| || ||||| Sbjct 70768 ATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCAT 70805 >seq332959 Length=315 Score = 95.1 bits (104), Expect = 9e-15 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | |||||||| || || ||| || |||||||||||||| Sbjct 131 CATACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATC 190 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||||||||| | |||||||| || | Sbjct 191 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGG 250 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | |||||||| || | Sbjct 251 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCT 309 Query 44286 CCACCT 44291 |||||| Sbjct 310 CCACCT 315 Score = 86.0 bits (94), Expect = 4e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 |||| | |||||||| || | || | |||||||| ||| ||||| ||||| | Sbjct 1 AGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCAC-G 59 Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 ||| | |||||||| || |||||||||| ||| || ||||| || || ||||||||| Sbjct 60 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTC 119 Query 44324 ACGAAGATTTGCAT 44337 |||||||| ||||| Sbjct 120 ACGAAGATCTGCAT 133 >seq59220 Length=24887 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||| ||||| |||||||| || | | || Sbjct 15065 AGTCTCAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGACAAAGTACGT 15006 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | |||| || | ||| | ||||| Sbjct 15005 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCT 14946 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| || || | || || | ||| | || Sbjct 14945 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAACTCGAGAGTG 14886 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || | ||||||||| || || ||||| Sbjct 14885 ATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCAT 14848 >seq2274 Length=301413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GT-TGG 44176 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | || || Sbjct 270442 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 270501 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 | | || ||||| ||||| || | |||||||| | ||||| || | ||| | ||| Sbjct 270502 C---CATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 270558 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 || || ||| ||||| ||| | || |||| || || || | ||||| | Sbjct 270559 TCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGACCTCGAGA 270618 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || ||| ||||||||||| || || ||||| Sbjct 270619 GTGATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCAT 270659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357738895954209