Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq12033 179 5e-40 seq4688 96.9 5e-15 >seq12033 Length=514483 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| || | |||||||||||| |||||||| || ||||| ||||| Sbjct 405016 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 404957 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || |||||||||||||| || ||||| ||||| ||||| Sbjct 404956 CTGTTGTGTTCCCGCAGCCAAATGGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 404897 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | || || ||| || | | || || |||||||| | Sbjct 404896 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGCGGGTAGATCATTTCG 404837 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || | |||||||| Sbjct 404836 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 404788 Score = 145 bits (160), Expect = 1e-29 Identities = 218/310 (70%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| |||| | ||| | || || ||||| || || ||||| |||||| ||||||| Sbjct 406707 CATCTTGAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTATTACAGATGAGAGACT 406648 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 |||| | || | |||| ||| || || || ||||| || || ||||| ||||||| Sbjct 406647 GAATTGAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCC 406588 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | || || || || || |||| || ||||| |||||||| || || || Sbjct 406587 AGTACTCAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCAG 406528 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 || | ||| |||| || |||||||||| ||||| ||||| || |||| | | | Sbjct 406527 CTTCTACCATGGTCTCCCCAAAGATGGCGTCTGGACGAGGCTTCTCTACCAGAAGGGCAG 406468 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 |||||||||| || || | |||||| || || || | || ||||| || |||| Sbjct 406467 GATACAGCTCCATGGCATCTATGTCTCCATAGAGTGCTTCTAACTCTGCAGCCATTTCCT 406408 Query 8577 TTTCTCCTGT 8586 | |||||||| Sbjct 406407 TCTCTCCTGT 406398 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 403858 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 403799 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 403798 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 403739 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| |||| | || | ||||| ||||| |||||| Sbjct 403738 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 403700 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | ||| || ||||| ||| || | | Sbjct 403024 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTG 402965 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||| || || || || |||||||||||| || ||||| | | ||||| | Sbjct 402964 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTGTAAGTT 402905 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || || |||||||||| ||||| |||| Sbjct 402904 GGCGGACTCTCAATCAAATGTGATCTCGCTGA 402873 >seq4688 Length=215400 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || | |||||||| || |||||||| | ||| || || Sbjct 2626 TCACCAATGAGGATGAGGCGGGCAGTCTGGAAGAGCTGCTCGTCGCCCCAGGTGGGGTGC 2685 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | |||||||| || ||||| | | Sbjct 2686 TCCGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGATCGTAGCGTAGAGC 2745 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || ||||||| Sbjct 2746 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA 2788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712278241430080