Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq17057 168 2e-36 seq11610 136 9e-27 seq2312 136 9e-27 seq311227 134 3e-26 seq59220 131 4e-25 seq332959 125 2e-23 seq2274 122 2e-22 seq101 113 1e-19 seq3131 87.8 4e-12 >seq17057 Length=148899 Score = 168 bits (186), Expect = 2e-36 Identities = 172/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || || || || || |||||||| |||| Sbjct 116987 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 117043 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| || ||||| || Sbjct 117044 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 117101 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| || || ||||| ||||| || ||||| |||||||| | ||||| Sbjct 117102 TCCCCCTGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCT 117161 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 117162 TTCTGATTACAACATCCAGAAAGAGTCTACCCTGCACCTGGT 117203 >seq11610 Length=252271 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || ||||| ||||| || |||||||| || || Sbjct 43778 CAGATCTTTGTAAAAACCCTGACTGGTAAAACCATCACTCTGGAGGTGGA--GCCTAGTG 43721 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || |||||||| |||||||| ||||||| Sbjct 43720 ACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAAGGCATCCCTCCAGACCAGC 43661 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 43660 AGAGGTTGATCTTTGCAGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 43601 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 43600 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 43560 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 43550 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 43493 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 43492 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 43433 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 43432 AGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 43373 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 43372 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 43332 Score = 131 bits (144), Expect = 4e-25 Identities = 155/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 43322 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 43265 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 43264 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 43205 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 43204 AGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 43145 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 43144 TCCAGAAAGAGTCTACTCTGCA-CTTG 43119 >seq2312 Length=925560 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||| || || ||||| ||||||||||| ||| || Sbjct 16421 CAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTGGAGCCCTCGGAT 16480 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || || || ||||| || |||||||| ||| | |||||||| Sbjct 16481 ACAACAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTTCTTACCAGCAA 16540 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 16541 AGACTGATCTTAGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 16600 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || |||||||| Sbjct 16601 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 16635 >seq311227 Length=303 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAAC 177995 |||||| | || |||||||| || ||| | || || ||| |||||||| || ||||| Sbjct 1 AAAACTTTGACCGGAAAAACAATAACCTTGGAAGTAGAACCATCAGACACAATAGAGAAT 60 Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 || ||| |||||| || || || |||||||| || || || |||||||| | || || Sbjct 61 GTGAAAGCAAAGATCCAAGATAAGGAAGGAATTCCACCAGATCAGCAACGTTTAATATTT 120 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCA 178115 || || |||||| | ||||||||||| || || ||| || || ||||||||||| Sbjct 121 GCTGGTAAACAGTTAGAAGATGGAAGAACACTGAGCGACTACAATATCCAAAAAGAAAGT 180 Query 178116 ACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||| | || || ||||| ||| Sbjct 181 ACACTCCATTTAGTATTAAGACTGAGA 207 >seq59220 Length=24887 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | ||||| || | ||||| |||||| | || ||| || Sbjct 14851 CAGATTTTTGTGAAGACCGTGACAGGGAAGATCATCACTCTCGAGTTCGAGCCCTCGGAT 14910 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| ||||||||||| ||||| ||| ||||| Sbjct 14911 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACTAGCAA 14970 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 14971 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 15030 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || |||||||| Sbjct 15031 CAAAATGAGTCCACTCTTCATCTAGTGTTGAGACT 15065 >seq332959 Length=315 Score = 125 bits (138), Expect = 2e-23 Identities = 128/165 (78%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 177967 AGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||| || ||| |||||||||||||||| || ||||| ||||| || ||||| Sbjct 315 AGGTGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGG 258 Query 178025 AATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGAC 178084 || || || |||||||| || || ||||| ||||| || ||||| |||||||| | || Sbjct 257 CATTCCCCCTGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCAC 198 Query 178085 TCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| | ||||| ||| |||| ||||| || || ||||| || || Sbjct 197 TCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 153 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| || |||||||| || ||| Sbjct 130 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGA--GCCCAGTG 73 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| || || || ||||||| Sbjct 72 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 13 Query 178042 AACGACTTATCT 178053 | || || |||| Sbjct 12 AGCGGCTCATCT 1 >seq2274 Length=301413 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || ||||| ||||| |||||||| | || || Sbjct 270656 CAGATTTTTGTGAAGACCCTGACGAAGAAAACCATCACTCTCGAGGTCAAGCCCTAGGAT 270597 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| ||||||||||| ||||| ||||||||| Sbjct 270596 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACCAGCAA 270537 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| | || || || || ||||||||| ||| | | || || ||| | Sbjct 270536 AGACTGATCTTTCCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAACATT 270477 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || |||||||| Sbjct 270476 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 270442 >seq101 Length=221765 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || | || || || |||| ||| |||| || || || Sbjct 70802 CAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCATTCTCAAGGTTGAGCCCTTGGAT 70743 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| ||||| || ||||| || ||||| ||||||||| Sbjct 70742 ACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGGATTCCTCCTGACCAGCAA 70683 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 70682 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATT 70623 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || || ||||| || |||||||| Sbjct 70622 CAAAAGGAGCCCACTCTTCATCTAGTGTTGAGACT 70588 >seq3131 Length=405952 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 177918 ATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGC 177977 ||| | || ||||||||||| || || ||||| || | | | | || |||| | | Sbjct 263259 ATGATGCAGATTTTCGTGAAGACCCTGACAGGTAAGAGCAACTCTCTTAAGGTCAAGCCC 263318 Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 | || || || || || || || | ||| ||||| || |||||| | ||||| ||| Sbjct 263319 TTGGATACAATAGAAAATGTAAAGGCCAGGATCCAGGATAAGGAAGGAGTTCCTCCCGAC 263378 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 |||||| |||| ||| | | || || || || |||||||| | || | | | || Sbjct 263379 CAGCAAAGACTGATCGTTACTGGCAAGCAACTGAAAGATGGATGTCCTTTGTCTAACTAC 263438 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || | ||||| || || || || |||||||| |||||||| Sbjct 263439 AATATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 263479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1195816570685338