Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq612 96.9 3e-15 >seq612 Length=937308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 372/576 (65%), Gaps = 14/576 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| | ||||| |||| ||||| |||||||| | ||| ||| | ||||| ||||| Sbjct 700889 GGGGATGTAGGCCCAGTTTATGGCTTTCAGTGGAGGCTTTTGGGA-CAGAATACAAAGAA 700831 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 | ||| | ||| | |||||| | || || ||||||| || | || || || Sbjct 700830 ATGGATTCAGATTATGCAGGTCAAGGAGTAGACCAACTGCAAAAGGTGACTGACACTATC 700771 Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCC 18968 ||||| ||||| || | || |||| | | | |||| |||||||| ||| | Sbjct 700770 AAAACCAACCCTGATGACAGAGGAATCACCCTGTGCGCTTGAAATCCAAAAGATCTTTTT 700711 Query 18969 TTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTA 19028 | |||| ||| |||| || || | | || ||||| ||||| | ||| |||| | Sbjct 700710 CTCATGGAACTTCCTCTGTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACAGTGAGCTG 700651 Query 19029 TCCTGCCAAGTATACC----AGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACAT 19084 | || ||| | || |||| || | || ||||||| | || || |||||||| Sbjct 700650 TTGTG--AAGAAACCCTTCTAGAGGTCAGCCGACGTGGGCCTATGTGTGCCATTCAACAT 700593 Query 19085 TGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAAC-CGGAG 19143 ||| | || | || || |||||| | || || | | | || |||| | || | || Sbjct 700592 TGCCAGCTACTCCCTGCTCACCTACGTGGTTGCACTTATCAC-GGACCTGAAGCAAGGTA 700534 Query 19144 ATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAG 19203 | || | || || || | |||||||| |||||| ||||| || || | | ||| Sbjct 700533 ACTTGGTACACACTTTGAGAGATGCACACATTTACCTGAATTGCATTGAGCCACTGAAAA 700474 Query 19204 TGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAG 19263 |||||| | || |||| | || | || ||||| || |||| | || Sbjct 700473 TGCAGCGTCATGGAGAGCCAACGTCGTTCC---AGCTCAAAATCCTTTGAAAACT-TGAG 700418 Query 19264 ATATAA-ACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccc 19322 | | || | ||||| || || || |||||| |||| || || ||||| |||| | Sbjct 700417 ACAAAAGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGGTACAATCCTCACCTGACT 700358 Query 19323 cTAAAAATGGAAATGGCTCTTTAATGGATTTTTAAA 19358 | ||| || |||||||| ||| | | ||||||| Sbjct 700357 ATTAAACTGAAAATGGCTGTTTTAAGTGCTTTTAAA 700322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399467137141695