Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq94 370 8e-98 seq970 289 2e-73 seq183 125 5e-24 seq612 96.9 3e-15 >seq94 Length=4258012 Score = 370 bits (410), Expect = 8e-98 Identities = 429/571 (75%), Gaps = 9/571 (2%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTC-ATATACTTCAAATTTGTACTTAATACTTTT 4013 |||| || ||| |||||| || || || |||||||| ||||||||||||||| | ||| Sbjct 3581476 AAAACACCTTTACATTAATCTTTTTTTTCCATATACTTAAAATTTGTACTTAATGCCTTT 3581535 Query 4014 CTCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAG 4073 |||||| || |||| |||||||| | ||| | |||| | |||||| |||| ||| | Sbjct 3581536 CTCTTCCTGGACATCCGAAAGAACCCCTGGGTGTTCTGGGATAAGTTTATATTCCTCCAA 3581595 Query 4074 ATCAAATTCTGGAAAA-AAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACA 4132 ||||| |||||||||| || ||||||| || ||| | ||||||||||| |||||||| | Sbjct 3581596 ATCAATTTCTGGAAAACAATGTGTCACTTTTAAATTACTGCATGATCCTTGTCACAAATA 3581655 Query 4133 GTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAA-CTACCTCCAATTATC 4191 || |||||| || | | | |||| | ||| || || |||||| || ||||| | ||| Sbjct 3581656 GTCTAAGATGGCCTAGCTTGTTCATGGATTCCTTGTAAACAGAAACTGCCTCCCACTATG 3581715 Query 4192 CAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCT 4251 || ||| ||| ||||||||| || |||||| || || |||||||||| ||| ||| Sbjct 3581716 CAAACCTCGTCCACTTTATTTATTAGTTCTGGTTGCTCAATAAGTTTTAAGTCATTATCC 3581775 Query 4252 AAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACA 4311 | ||| || | | ||||||||||| || || ||||| ||||| | |||||||| Sbjct 3581776 AGACTTTTGTCAAGAAAATGAGCTCCTTGAGGT---TCCTTGAGTTCTCTACTGAGAACT 3581832 Query 4312 ACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTA 4371 | |||||| ||| | |||||||| || |||||||| ||||| |||||||| ||||| || Sbjct 3581833 AAATTAATCCTGTCCTTTAAAGGTCGATTCTTCTCGGGAATGGAGAACCAGGTCTTCCTA 3581892 Query 4372 CCCATAATCACTAAATTCTGTTTATCTGGTACAGA--AGATGTAGTAGTCATTCTTTGGA 4429 |||||||| || |||||||||||| || | | || ||| || || || |||||||||| Sbjct 3581893 CCCATAATTACCAAATTCTGTTTACCTTCTGCTGAAGAGAGGTTGTGGTAATTCTTTGGA 3581952 Query 4430 AATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCA 4489 ||||||| || |||||| | || | || | ||| ||| || | |||| || | || Sbjct 3581953 AATGTTTGAATTCATTCCTGAG-CGGGGTCCAGGTCAGTCTCCGTTCTTGCTGATCCTCA 3582011 Query 4490 TGTTTTGAGCTACAGCAACAATGCAGTTTAG 4520 |||| || | || | || | ||||||||| Sbjct 3582012 TGTTCTGGGACACGGTGACCAAGCAGTTTAG 3582042 >seq970 Length=661808 Score = 289 bits (320), Expect = 2e-73 Identities = 360/490 (73%), Gaps = 10/490 (2%) Strand=Plus/Plus Query 3971 AATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAG 4030 ||| |||||| |||||| |||||| |||||||||||| | |||||| | || |||| || Sbjct 72439 AATCATTCTTTTCATATGCTTCAAGTTTGTACTTAATGCCTTTCTCCTTCTGGACATCAG 72498 Query 4031 AAAG----AACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | || || || |||| ||| | | |||||||| ||| || | ||||| |||||| Sbjct 72499 AGAGCATGAATACCTGGAAATTTTGGGAGAAGTTTGTGTTTTTCCAAATCAATGTCTGGA 72558 Query 4087 AAAAAG----GTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATC 4142 ||||| ||||||| |||||| || ||||||||||| |||||||| ||| |||||| Sbjct 72559 AAAAAAAAATGTGTCACTTTCAAATTCCTGCATGATCCTTGTCACAAATAGTCTAAGATG 72618 Query 4143 GCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTC 4202 || | | | ||| | ||| | |||| |||||| | || | | |||| ||||||| Sbjct 72619 GCCTAGCTTGCTCGTGGCTGCCTTATCATCAGAACAAACTTGCACTCTCCAAACCATGTT 72678 Query 4203 TACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGC 4262 |||| || || | |||| || || || || |||||||| |||||||| | ||| | || Sbjct 72679 CACTTGATGTGTTCATTCCGG-TGCTCAGTCAGTTTTAAGGCATCATCCAGACTTTGGGC 72737 Query 4263 TAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCT 4322 | || ||||| || ||| || | ||||| ||||| | |||||| | | || || || Sbjct 72738 AAGAAGATGAGATCCTTGTAGAGGTTCCTTGAGTTCTCTCCTGAGAGCTAAATCCATCCT 72797 Query 4323 GCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCAC 4382 | | ||||||| | |||||||||| || |||||||| |||||| |||||||| |||| Sbjct 72798 GGCCTTTAAAGCTTGCTTCTTCTCAGAAACGGAGAACCAGGTCTTTCTACCCATAGTCAC 72857 Query 4383 TAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATC 4442 ||||||||| | || | | |||||||| | ||| ||||| ||||| || || || Sbjct 72858 -AAATTCTGTGTTCCTTCTGCTGAAGATGTTATGGTCGTTCTTAGGAAACACTTGAATTC 72916 Query 4443 ATTCATAAGT 4452 |||| | ||| Sbjct 72917 ATTCCTGAGT 72926 >seq183 Length=3056380 Score = 125 bits (138), Expect = 5e-24 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||| ||| | ||||||||||| ||||||||||| Sbjct 88615 CTTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGCCGATTCTTCTCAGG 88674 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 88675 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 88723 Score = 105 bits (116), Expect = 5e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||| ||| ||||| | |||||| | |||||| |||||||||| ||| || || Sbjct 80302 TTATAAACAGCACTGCCTCCTACTATCCAAATCATGTCCACTTTATTTGTTAAGTCGGGT 80361 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||||||||| |||||||| | || || || | ||||||||||| |||||| Sbjct 80362 TGCTCAATAAGTTTTAAGGCATCATCCAGGCTTTTGGCAAGAAAATGAGCTCCTTGTGGA 80421 Query 4285 AGCTCC 4290 | ||| Sbjct 80422 GGTTCC 80427 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 ||| || ||||| || | ||||| |||||||||||| | ||||| |||||| || ||||| Sbjct 77978 AAGATTATATTTTTCCAAATCAATTTCTGGAAAAAATGCGTCACTTTCAAATTCCTGCAT 78037 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGG 4148 |||||| |||||||| ||| | |||| || ||| Sbjct 78038 GATCCTTGTCACAAATAGTCTGAGATGGCCTGG 78070 >seq612 Length=937308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAA 101985 ||| ||||| |||| || | ||| || |||||| ||||| ||||| ||| ||| Sbjct 700726 ATTTCAAGCGCACAGGGTGATTCCTCTGTCATCAGGGTTGGTTTTGATAGTGTCAGTCAC 700785 Query 101986 CTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGC 102045 || || | |||||| ||||||| ||| |||||| | | |||| ||||||| Sbjct 700786 CTTTTGCAGTTGGTCTACTCCTTGACCTGCATAATCTGAATCCATTTCTTTGTATTCTG- 700844 Query 102046 TCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTG 102100 ||| ||| ||||||||||||| ||||| || || || | ||| ||||| |||||| Sbjct 700845 TCCCAAAAGCCTCCACTGAAAGCCATAAACTGGGCCTACATCCCCTTCTTCTCTG 700899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361217866787321