Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq94 370 8e-98
seq970 289 2e-73
seq183 125 5e-24
seq612 96.9 3e-15
>seq94
Length=4258012
Score = 370 bits (410), Expect = 8e-98
Identities = 429/571 (75%), Gaps = 9/571 (2%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTC-ATATACTTCAAATTTGTACTTAATACTTTT 4013
|||| || ||| |||||| || || || |||||||| ||||||||||||||| | |||
Sbjct 3581476 AAAACACCTTTACATTAATCTTTTTTTTCCATATACTTAAAATTTGTACTTAATGCCTTT 3581535
Query 4014 CTCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAG 4073
|||||| || |||| |||||||| | ||| | |||| | |||||| |||| ||| |
Sbjct 3581536 CTCTTCCTGGACATCCGAAAGAACCCCTGGGTGTTCTGGGATAAGTTTATATTCCTCCAA 3581595
Query 4074 ATCAAATTCTGGAAAA-AAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACA 4132
||||| |||||||||| || ||||||| || ||| | ||||||||||| |||||||| |
Sbjct 3581596 ATCAATTTCTGGAAAACAATGTGTCACTTTTAAATTACTGCATGATCCTTGTCACAAATA 3581655
Query 4133 GTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAA-CTACCTCCAATTATC 4191
|| |||||| || | | | |||| | ||| || || |||||| || ||||| | |||
Sbjct 3581656 GTCTAAGATGGCCTAGCTTGTTCATGGATTCCTTGTAAACAGAAACTGCCTCCCACTATG 3581715
Query 4192 CAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCT 4251
|| ||| ||| ||||||||| || |||||| || || |||||||||| ||| |||
Sbjct 3581716 CAAACCTCGTCCACTTTATTTATTAGTTCTGGTTGCTCAATAAGTTTTAAGTCATTATCC 3581775
Query 4252 AAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACA 4311
| ||| || | | ||||||||||| || || ||||| ||||| | ||||||||
Sbjct 3581776 AGACTTTTGTCAAGAAAATGAGCTCCTTGAGGT---TCCTTGAGTTCTCTACTGAGAACT 3581832
Query 4312 ACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTA 4371
| |||||| ||| | |||||||| || |||||||| ||||| |||||||| ||||| ||
Sbjct 3581833 AAATTAATCCTGTCCTTTAAAGGTCGATTCTTCTCGGGAATGGAGAACCAGGTCTTCCTA 3581892
Query 4372 CCCATAATCACTAAATTCTGTTTATCTGGTACAGA--AGATGTAGTAGTCATTCTTTGGA 4429
|||||||| || |||||||||||| || | | || ||| || || || ||||||||||
Sbjct 3581893 CCCATAATTACCAAATTCTGTTTACCTTCTGCTGAAGAGAGGTTGTGGTAATTCTTTGGA 3581952
Query 4430 AATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCA 4489
||||||| || |||||| | || | || | ||| ||| || | |||| || | ||
Sbjct 3581953 AATGTTTGAATTCATTCCTGAG-CGGGGTCCAGGTCAGTCTCCGTTCTTGCTGATCCTCA 3582011
Query 4490 TGTTTTGAGCTACAGCAACAATGCAGTTTAG 4520
|||| || | || | || | |||||||||
Sbjct 3582012 TGTTCTGGGACACGGTGACCAAGCAGTTTAG 3582042
>seq970
Length=661808
Score = 289 bits (320), Expect = 2e-73
Identities = 360/490 (73%), Gaps = 10/490 (2%)
Strand=Plus/Plus
Query 3971 AATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAG 4030
||| |||||| |||||| |||||| |||||||||||| | |||||| | || |||| ||
Sbjct 72439 AATCATTCTTTTCATATGCTTCAAGTTTGTACTTAATGCCTTTCTCCTTCTGGACATCAG 72498
Query 4031 AAAG----AACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086
| || || || |||| ||| | | |||||||| ||| || | ||||| ||||||
Sbjct 72499 AGAGCATGAATACCTGGAAATTTTGGGAGAAGTTTGTGTTTTTCCAAATCAATGTCTGGA 72558
Query 4087 AAAAAG----GTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATC 4142
||||| ||||||| |||||| || ||||||||||| |||||||| ||| ||||||
Sbjct 72559 AAAAAAAAATGTGTCACTTTCAAATTCCTGCATGATCCTTGTCACAAATAGTCTAAGATG 72618
Query 4143 GCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTC 4202
|| | | | ||| | ||| | |||| |||||| | || | | |||| |||||||
Sbjct 72619 GCCTAGCTTGCTCGTGGCTGCCTTATCATCAGAACAAACTTGCACTCTCCAAACCATGTT 72678
Query 4203 TACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGC 4262
|||| || || | |||| || || || || |||||||| |||||||| | ||| | ||
Sbjct 72679 CACTTGATGTGTTCATTCCGG-TGCTCAGTCAGTTTTAAGGCATCATCCAGACTTTGGGC 72737
Query 4263 TAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCT 4322
| || ||||| || ||| || | ||||| ||||| | |||||| | | || || ||
Sbjct 72738 AAGAAGATGAGATCCTTGTAGAGGTTCCTTGAGTTCTCTCCTGAGAGCTAAATCCATCCT 72797
Query 4323 GCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCAC 4382
| | ||||||| | |||||||||| || |||||||| |||||| |||||||| ||||
Sbjct 72798 GGCCTTTAAAGCTTGCTTCTTCTCAGAAACGGAGAACCAGGTCTTTCTACCCATAGTCAC 72857
Query 4383 TAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATC 4442
||||||||| | || | | |||||||| | ||| ||||| ||||| || || ||
Sbjct 72858 -AAATTCTGTGTTCCTTCTGCTGAAGATGTTATGGTCGTTCTTAGGAAACACTTGAATTC 72916
Query 4443 ATTCATAAGT 4452
|||| | |||
Sbjct 72917 ATTCCTGAGT 72926
>seq183
Length=3056380
Score = 125 bits (138), Expect = 5e-24
Identities = 93/109 (85%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | |||||| ||| | ||||||||||| |||||||||||
Sbjct 88615 CTTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGCCGATTCTTCTCAGG 88674
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| ||||| ||||||||||||| |||||||||||| ||
Sbjct 88675 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 88723
Score = 105 bits (116), Expect = 5e-18
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||| ||| ||||| | |||||| | |||||| |||||||||| ||| || ||
Sbjct 80302 TTATAAACAGCACTGCCTCCTACTATCCAAATCATGTCCACTTTATTTGTTAAGTCGGGT 80361
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
|| || |||||||||| |||||||| | || || || | ||||||||||| ||||||
Sbjct 80362 TGCTCAATAAGTTTTAAGGCATCATCCAGGCTTTTGGCAAGAAAATGAGCTCCTTGTGGA 80421
Query 4285 AGCTCC 4290
| |||
Sbjct 80422 GGTTCC 80427
Score = 91.5 bits (100), Expect = 1e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
||| || ||||| || | ||||| |||||||||||| | ||||| |||||| || |||||
Sbjct 77978 AAGATTATATTTTTCCAAATCAATTTCTGGAAAAAATGCGTCACTTTCAAATTCCTGCAT 78037
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGG 4148
|||||| |||||||| ||| | |||| || |||
Sbjct 78038 GATCCTTGTCACAAATAGTCTGAGATGGCCTGG 78070
>seq612
Length=937308
Score = 96.9 bits (106), Expect = 3e-15
Identities = 127/175 (73%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAA 101985
||| ||||| |||| || | ||| || |||||| ||||| ||||| ||| |||
Sbjct 700726 ATTTCAAGCGCACAGGGTGATTCCTCTGTCATCAGGGTTGGTTTTGATAGTGTCAGTCAC 700785
Query 101986 CTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGC 102045
|| || | |||||| ||||||| ||| |||||| | | |||| |||||||
Sbjct 700786 CTTTTGCAGTTGGTCTACTCCTTGACCTGCATAATCTGAATCCATTTCTTTGTATTCTG- 700844
Query 102046 TCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTG 102100
||| ||| ||||||||||||| ||||| || || || | ||| ||||| ||||||
Sbjct 700845 TCCCAAAAGCCTCCACTGAAAGCCATAAACTGGGCCTACATCCCCTTCTTCTCTG 700899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361217866787321
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |