Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq808 98.7 9e-16 seq331 91.5 1e-13 seq265 86.0 5e-12 seq376 84.2 2e-11 >seq808 Length=762264 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||||| ||||| | || || || ||||| ||| ||| |||||| || Sbjct 447812 ATGCAGATTTTCATGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTCA 447871 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || ||||| ||||| | || ||||| Sbjct 447872 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 447931 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT-TCCAAAACTATGGCCGATTACAA 29140 |||||||| |||||||| ||||| |||||||||||| || | || || | || ||||| Sbjct 447932 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATATCT-TGTCTGACTACAA 447990 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||| ||||| || |||||||| | ||||| Sbjct 447991 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 448023 >seq331 Length=2147541 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || ||| | ||||| || || || || ||||| ||| | | | |||||| Sbjct 851239 AAGATGCAGATTTTCGTGAAAACCTTTACCGGGAAGACCATCACCCTCAAGGCTGAACCC 851298 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || | ||| || || ||||| ||||| | || ||| Sbjct 851299 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 851358 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 851359 CAGCAAAGACAGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 851418 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| ||||| || |||||||| | ||||| Sbjct 851419 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 851453 >seq265 Length=2261556 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || ||| | ||||| | || || || ||||| ||| ||| |||||| Sbjct 840913 AAGATGCAGATTTTCGTGAAAACCCTTACCGGGAAGACCATCACCCTCGAGGTTGAACCC 840972 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || | ||| || || ||||| ||||| | || ||| Sbjct 840973 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 841032 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 841033 CAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 841092 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| ||||| || |||||||| | ||||| Sbjct 841093 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 841127 >seq376 Length=1527771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| |||||||| |||||| | ||||| ||||||||| Sbjct 1196376 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTACTGGCAAGCAACTGGAA 1196435 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| | ||| || | || ||||| ||||| ||||| || |||||||| | ||||| Sbjct 1196436 GATGGACATACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 1196494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428296476768005