Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq19 255 7e-63 seq827 143 3e-29 seq612 91.5 2e-13 >seq19 Length=7530758 Score = 255 bits (282), Expect = 7e-63 Identities = 570/846 (67%), Gaps = 10/846 (1%) Strand=Plus/Minus Query 176359 CCGCC-CTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 176417 ||||| |||||| || |||||| |||| | |||||||| | | |||||| | Sbjct 3690558 CCGCCACTGTATGCCCTGGTGTTTGGAGTTGGTCTCCTGGGCAATGTGCTGGTGGTGGTG 3690499 Query 176418 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 176477 || ||| || ||||| | | | | || ||||| | ||| | || ||||| Sbjct 3690498 ATCCTCAAAAAATACAGGCGCCTGCGCATTATGACCAACATCTACCTGCTCAATTTGGCG 3690439 Query 176478 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 176537 || ||||||||||| ||||| | || | || || ||||| |||||||| | || | Sbjct 3690438 ATTTCTGACTTGCTGTTTCTAGTCACCCTCCCCTTCTGGATTCACTATATCAGG-TGGA- 3690381 Query 176538 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 176597 |||| ||| ||||| | | ||||||| ||||| ||| ||| |||||| Sbjct 3690380 -ATGAGTGGGTGTTTGGCCATCGCATGTGTAAGTTGCTCTCGGGGCTGTATTACATAGGC 3690322 Query 176598 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 176657 ||||||| || |||||| |||||||||||| || | |||||||| || || ||||| Sbjct 3690321 TTGTACAGTGAGATCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATTGTC 3690262 Query 176658 TATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT 176717 | ||||| || || || | || || ||| ||| || | | | |||| | Sbjct 3690261 CACGCTGTGTTCGCGCTGCGGGCCCGGACTGTCACCATTGGGATCATAAGCAGTGTCTTC 3690202 Query 176718 ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGAT 176777 |||||| ||||||||| || ||||||| |||||| |||| ||| | |||||| Sbjct 3690201 ACCTGGGCCCTGGCAGGGCTGGCTGCCCTCCCCGAATTTATCTTCCATAGGTTCCAAGAG 3690142 Query 176778 GACAATGGTAGGGTTCAGTGTGATCCTTACTACCCAGAG-ATGTCTACAAATGTTTGGAG 176836 || || ||||| || ||| || |||||| ||| | | | |||| Sbjct 3690141 GATTCTGAACAGGTTCTCTGCAGTCCACTTTATCCAGAGGATGAAGA-AGACACCTGGAA 3690083 Query 176837 GCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGC 176896 ||| | | | || | ||| | | || ||||| || ||||||||||||||||||| Sbjct 3690082 GCGTTTCTATGCTGTGAGAATGAATGTCTTGGGTCTCGTTCTGCCTCTGCTCATTATGGC 3690023 Query 176897 TGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAA 176956 ||||||||| | ||| || | || ||| | || ||||||| | || ||||| || Sbjct 3690022 TGTCTGCTATGCCGGAATCATTAAAACGCTGGTCAGATGCCCCAGTAGAAAAAAGTATAA 3689963 Query 176957 GGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAA 177016 |||||| ||||||| |||||||||||||||| || ||| |||| ||| ||| ||||| Sbjct 3689962 GGCCATTCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGGGACCTTACAA 3689903 Query 177017 CATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTT--AACCTGCAGTGTGCATTG 177074 | | |||||||| || || | | ||| | | |||||| | ||| | |||| | Sbjct 3689902 CCTGGTTCTCCTTCTCTCCGCTTATCAAACGA-TCTTCTTTGAGGCTG-ACTGTGAGCGG 3689845 Query 177075 AGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGC 177134 |||| | ||||| |||| ||||| | || | | |||||||| ||||| || Sbjct 3689844 AGCAAACAGCTGGACGTGGCCATGCTGGTGACGGAGGTGATCGCCTACACGCACTGCTGT 3689785 Query 177135 ATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTC 177194 |||| || ||||||||||| || || || |||| ||| | ||||| ||||||| Sbjct 3689784 GTCAATCCTGTGATCTACGCCTTTGTTGGAGAGAGGTTCCGGGAGCACCTCCACCACTTT 3689725 Query 177195 TTCCAC 177200 |||||| Sbjct 3689724 TTCCAC 3689719 Score = 255 bits (282), Expect = 7e-63 Identities = 570/846 (67%), Gaps = 10/846 (1%) Strand=Plus/Minus Query 9473 CCGCC-CTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 9531 ||||| |||||| || |||||| |||| | |||||||| | | |||||| | Sbjct 3690558 CCGCCACTGTATGCCCTGGTGTTTGGAGTTGGTCTCCTGGGCAATGTGCTGGTGGTGGTG 3690499 Query 9532 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 9591 || ||| || ||||| | | | | || ||||| | ||| | || ||||| Sbjct 3690498 ATCCTCAAAAAATACAGGCGCCTGCGCATTATGACCAACATCTACCTGCTCAATTTGGCG 3690439 Query 9592 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 9651 || ||||||||||| ||||| | || | || || ||||| |||||||| | || | Sbjct 3690438 ATTTCTGACTTGCTGTTTCTAGTCACCCTCCCCTTCTGGATTCACTATATCAGG-TGGA- 3690381 Query 9652 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 9711 |||| ||| ||||| | | ||||||| ||||| ||| ||| |||||| Sbjct 3690380 -ATGAGTGGGTGTTTGGCCATCGCATGTGTAAGTTGCTCTCGGGGCTGTATTACATAGGC 3690322 Query 9712 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 9771 ||||||| || |||||| |||||||||||| || | |||||||| || || ||||| Sbjct 3690321 TTGTACAGTGAGATCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATTGTC 3690262 Query 9772 TATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT 9831 | ||||| || || || | || || ||| ||| || | | | |||| | Sbjct 3690261 CACGCTGTGTTCGCGCTGCGGGCCCGGACTGTCACCATTGGGATCATAAGCAGTGTCTTC 3690202 Query 9832 ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGAT 9891 |||||| ||||||||| || ||||||| |||||| |||| ||| | |||||| Sbjct 3690201 ACCTGGGCCCTGGCAGGGCTGGCTGCCCTCCCCGAATTTATCTTCCATAGGTTCCAAGAG 3690142 Query 9892 GACAATGGTAGGGTTCAGTGTGATCCTTACTACCCAGAG-ATGTCTACAAATGTTTGGAG 9950 || || ||||| || ||| || |||||| ||| | | | |||| Sbjct 3690141 GATTCTGAACAGGTTCTCTGCAGTCCACTTTATCCAGAGGATGAAGA-AGACACCTGGAA 3690083 Query 9951 GCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGC 10010 ||| | | | || | ||| | | || ||||| || ||||||||||||||||||| Sbjct 3690082 GCGTTTCTATGCTGTGAGAATGAATGTCTTGGGTCTCGTTCTGCCTCTGCTCATTATGGC 3690023 Query 10011 TGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAA 10070 ||||||||| | ||| || | || ||| | || ||||||| | || ||||| || Sbjct 3690022 TGTCTGCTATGCCGGAATCATTAAAACGCTGGTCAGATGCCCCAGTAGAAAAAAGTATAA 3689963 Query 10071 GGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAA 10130 |||||| ||||||| |||||||||||||||| || ||| |||| ||| ||| ||||| Sbjct 3689962 GGCCATTCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGGGACCTTACAA 3689903 Query 10131 CATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTT--AACCTGCAGTGTGCATTG 10188 | | |||||||| || || | | ||| | | |||||| | ||| | |||| | Sbjct 3689902 CCTGGTTCTCCTTCTCTCCGCTTATCAAACGA-TCTTCTTTGAGGCTG-ACTGTGAGCGG 3689845 Query 10189 AGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGC 10248 |||| | ||||| |||| ||||| | || | | |||||||| ||||| || Sbjct 3689844 AGCAAACAGCTGGACGTGGCCATGCTGGTGACGGAGGTGATCGCCTACACGCACTGCTGT 3689785 Query 10249 ATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTC 10308 |||| || ||||||||||| || || || |||| ||| | ||||| ||||||| Sbjct 3689784 GTCAATCCTGTGATCTACGCCTTTGTTGGAGAGAGGTTCCGGGAGCACCTCCACCACTTT 3689725 Query 10309 TTCCAC 10314 |||||| Sbjct 3689724 TTCCAC 3689719 >seq827 Length=831450 Score = 143 bits (158), Expect = 3e-29 Identities = 128/160 (80%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||| | |||||| || || ||||||||||| ||||||||||| | ||| Sbjct 170661 CAGCGCCGGAGCCGGAGCCTGAGTGTCTTCAGCTTTTCCCCGAGGGAGTTCACGTGCTCC 170720 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | || ||| |||| |||| |||||||||||| |||| |||||||||| Sbjct 170721 TTGAT---GTCTGGGCCCTGGCTCTCAGCCTTGGGCATCACCTCTTCCAAGTAAAACTGG 170777 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCTTAA 138241 |||||||| |||| ||| ||||| ||||||||||||| || Sbjct 170778 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCTAAA 170817 Score = 105 bits (116), Expect = 8e-18 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 || ||||||||||| | | |||| |||| | ||||||||||| |||||||| || |||| Sbjct 168464 CTTAGTTTTTCATCCTCATTGTCAGGTAGTCTTCTATGTAGTTGATGAAGATATCGAACT 168523 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| |||||||||||||| || ||||||| Sbjct 168524 CACTCATGGCTTTGTAGACCCCTTTGTCTTGGAGCT 168559 >seq612 Length=937308 Score = 91.5 bits (100), Expect = 2e-13 Identities = 231/348 (66%), Gaps = 5/348 (1%) Strand=Plus/Plus Query 145566 GTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCAC 145625 ||| || | ||| || || | | |||||| || ||| ||||||||||| | ||| | Sbjct 700364 GTGAGGATTGTACCCTTCAATCTGAAAGTCTTCAGCCTTGAAGTCATCTTTTGTCTCAAG 700423 Query 145626 CCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAG 145685 | ||||| ||||| |||| | || |||| | | |||| | ||||| Sbjct 700424 TTTTCAAAGGATTTTGAGCT--GGAACGACGTTGGCTCTCCATGAC-GCTGCATTTTCAG 700480 Query 145686 GGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGG 145745 ||||| | | || ||||| | ||| || || | || ||| | |||| || | Sbjct 700481 TGGCTCAATGCAATTCAGGTAAATGTGTGCATCTCTCAAAGTGTGTACCAAGTTACCTTG 700540 Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| |||||| | || |||| |||||| ||||||||||||||||| |||||||| Sbjct 700541 CTTCAGGTCCGTGATAAGTGCAACCACGTAGGTGAGCAGGGAGTAGCTGGCAATGTTGAA 700600 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCT--GGCAGGAGAGCTCCCCG 145863 ||||| | || |||| ||| | || | || | | | | || | ||||| | | Sbjct 700601 TGGCACACATAGGCCCACGTCGGCTGACCTCTAGAAGGGTTTCTTCACAACAGCTCACTG 700660 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 | |||||||||||||||| ||| ||||| | || || ||||| Sbjct 700661 TTCACCACGTAGAACTGGCAAAGGGCATGGCACAGAGGAAGTTCCATG 700708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590020956606840