Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 122 7e-23
seq717 114 1e-20
seq298 105 6e-18
seq331 93.3 4e-14
seq45 89.7 4e-13
seq808 86.0 5e-12
seq265 86.0 5e-12
>seq5307
Length=1324
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||||||| | ||||||| || | ||||||||| || || || |||||||| |
Sbjct 955 CCACCTCGCAGACGAAGCACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAG 896
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||||||||||||||||||| |||| || | ||||||||| ||
Sbjct 895 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG 836
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||| || ||| | | | | ||| |||| ||||||
Sbjct 835 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGGCATTCTCAATAGTGTCACTGGGCTCGACC 776
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || ||||||||||| || | || || ||||| || |||||
Sbjct 775 TCAAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 729
>seq717
Length=839118
Score = 114 bits (126), Expect = 1e-20
Identities = 161/226 (71%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|| ||||||| | ||||||| |||| ||||||||| || || || ||| |||| | |
Sbjct 563444 CCACTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTACAGTCTGAGA 563503
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
| || || | ||||||||||||||||| ||| |||| || ||||||||| || |
Sbjct 563504 GAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGTGGGA 563563
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129
||| |||||||| ||| || ||| || | | | ||| |||| |||||| |
Sbjct 563564 TGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCT 563623
Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
| | || ||||||||||| || | || || ||||| || |||||
Sbjct 563624 CAAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 563669
>seq298
Length=2265018
Score = 105 bits (116), Expect = 6e-18
Identities = 161/227 (71%), Gaps = 3/227 (1%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||||||| | ||||||| |||| ||||||||| || || || || ||||| |
Sbjct 584599 CCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAG-- 584656
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | |||||||||||||||||| || |||| || | ||||||||| ||
Sbjct 584657 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGG 584716
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||| || ||| || | | | ||| |||| ||||||
Sbjct 584717 ATGCCCTCCTTGTCTTGGAT-TTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACC 584775
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| || ||||||||||| || | || || ||||| | |||||
Sbjct 584776 TCAGGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGGTCTGCAT 584822
>seq331
Length=2147541
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || || | ||| | ||| | ||||||||||||||||||||| ||||| | |
Sbjct 851468 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 851409
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | | || ||||| || ||||| ||| | || |||| ||||| || ||
Sbjct 851408 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGATCAGGAGGA 851349
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||| || |||||| || || | | | ||||| ||| || |
Sbjct 851348 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCC 851289
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
| | ||| |||||||| ||||| || ||||| || || || ||||| |||
Sbjct 851288 TTGAGGGTGATGGTCTTCCCGGTAAAGGTTTTCACGAAAATCTGCATCTTG 851238
>seq45
Length=5545317
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/227 (70%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022
|||||||| |||| ||||||||| || || || |||||||| | || || || | ||
Sbjct 1737686 GAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGACCATC 1737745
Query 21023 CTCCAGCTGTTTG-CCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGT 21081
||||||||||| | ||| || |||| || ||||||||||| || | ||| |||||||
Sbjct 1737746 CTCCAGCTGTTGGCCCCACAAAAATCAGACTCTGCTGGTCAGGTGGGATGCCCTCCTTGT 1737805
Query 21082 CGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGG 21141
| ||| || ||| || | | || ||| |||| || | || ||||
Sbjct 1737806 CTTGGATTTTAGCTTTGACATTCTCAGTGGTGTCA---GGCTTGACCTCGAGTGTGATGG 1737862
Query 21142 TCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCTCTT 21187
||||||| || | || || ||||| || ||||| | || |||| ||
Sbjct 1737863 TCTTGCCTGTCAGGGTCTTCACAAAAATCTGCATCTCTGCATCTGTT 1737909
>seq808
Length=762264
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || || | ||| | ||| | ||||||||||||||||||||| ||||| | |
Sbjct 448038 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 447979
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| | | || | || ||||| || ||||| ||| | || ||||| ||||| || ||
Sbjct 447978 AAGATATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 447919
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||| || |||||| || || | | | ||||| ||| ||
Sbjct 447918 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACC 447859
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||| || || | ||||| | || || |||||
Sbjct 447858 TCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCATGAAAATCTGCAT 447812
>seq265
Length=2261556
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017
|| || | ||| | ||| | ||||||||||||||||||||| ||||| | || || |
Sbjct 841133 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 841074
Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077
| || ||||| || ||||| ||| | || |||| ||||| || || | ||||||
Sbjct 841073 CCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCC 841014
Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTA 21137
|| || |||||| || || | | | ||||| ||| || || | |||
Sbjct 841013 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTG 840954
Query 21138 ATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|||||||| ||||| | ||||| || || || ||||| |||
Sbjct 840953 ATGGTCTTCCCGGTAAGGGTTTTCACGAAAATCTGCATCTTG 840912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422220237483836
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |