Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq927 230 2e-55 seq5307 118 1e-21 seq717 109 6e-19 seq298 98.7 1e-15 seq45 98.7 1e-15 seq265 96.9 4e-15 seq808 91.5 2e-13 seq73 86.0 6e-12 seq331 84.2 2e-11 seq210 82.4 8e-11 >seq927 Length=612318 Score = 230 bits (254), Expect = 2e-55 Identities = 404/582 (69%), Gaps = 5/582 (1%) Strand=Plus/Minus Query 116625 AATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGG 116684 |||||| || || |||| ||||| || || || ||||| || || ||||| | |||| Sbjct 154477 AATACCATGATATTTGGCAGATGTATAAGAAAGCGGAGGCTTCCTTTTGGACAGCTGAGG 154418 Query 116685 AGGTGGACCTGTCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 | ||||| || ||||||||| | ||| ||||||| | |||| | ||| | || Sbjct 154417 AAGTGGATCTCTCCAAGGACCTCCAGC-ACTGGGAAGCCCTGAAGCCTGATGAGAGATAT 154359 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 || || || || || || || || || || || || ||||| ||||| || || || Sbjct 154358 TTTATATCCCATGTTCTTGCTTTCTTTGCTGCGAGTGATGGCATAGTCAATGAAAACTTG 154299 Query 116804 GTCGAGCG-TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 || ||||| ||| || || || | ||| | | || || || || ||||| ||||| || Sbjct 154298 GTGGAGCGGTTTAGC-CAAGAAATTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCA 154240 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG 116922 || |||||||| ||| || || || |||||| ||||| |||||||| | Sbjct 154239 AATTGCCATGGA-AACAAACATTCTGAGATGTATAGTCTCCTCAATGACACGTATATTAA 154181 Query 116923 CTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982 ||| |||| | | || | || |||||||| ||||| ||||| || ||||| | Sbjct 154180 AGATTCCAAGGAAAGGGAGTGTCTCTTCAACGCCATTGAGACAATGCCTTGTGTCAAGAA 154121 Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCT 117042 |||||| || ||||| |||| ||||| | | || |||||| ||| || || || | Sbjct 154120 GAAGGCAGATTGGGCCTTGCGTTGGATTGGGGACAAAGAGGCTACCTATGGAGAACGTGT 154061 Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102 || || || || || || || || |||||||||| || ||| || | ||||| || Sbjct 154060 TGTAGCTTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTG 154001 Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162 |||||||||| | || || ||| | ||||| || || |||||| || || ||| || Sbjct 154000 GCTCAAGAAATGAGGACTGATGTCTGGCCTCACATTTTCCAACGAACTTATTAGCAGAGA 153941 Query 117163 CGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCA 117204 |||||| | || || ||||||||||| || ||||||| || Sbjct 153940 TGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA 153899 >seq5307 Length=1324 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | || ||||| ||| Sbjct 729 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 788 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | || || ||| | ||||| | ||||| ||||||||||| | ||||| Sbjct 789 GACACTATTGAGAATGC-CAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 847 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||||||||||||||| || | ||||| ||| ||||| || Sbjct 848 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAA 907 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| || || Sbjct 908 TATCCAGAAAGAGTCCACTCTACA 931 >seq717 Length=839118 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | || ||||| ||| Sbjct 563669 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 563610 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 563609 GACACTATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 563550 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | || |||||||||||||| || | ||||| ||| |||| || Sbjct 563549 CAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTGTAAT 563490 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| ||||| Sbjct 563489 ATCCAGAAAGAGTCCACTCTGCA 563467 >seq298 Length=2265018 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| | || || || || || |||||||| |||||||| || ||||| ||| Sbjct 584822 ATGCAGACCTTTGTGAAGACCCTGACGGGCAAGACCATCACACCTGAGGTCGAGCCCAGT 584763 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||| | | ||||| ||||||||||| | |||||| Sbjct 584762 GACACTATTGAGAATGTCAAAGCTAAA-TCCAAGACAAGGAGGGCATCCCACCTGACCAG 584704 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | | ||||||||||||||| || | ||||| ||| ||||| || Sbjct 584703 CAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTC--TGACTAGAAT 584646 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| ||||| Sbjct 584645 ATCCAGAAAGAGTCCACTCTGCA 584623 >seq45 Length=5545317 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| |||| ||| ||||| Sbjct 1737896 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTC-AAGCCT-- 1737840 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||| | ||||| | ||||| ||||||||||| | ||||| Sbjct 1737839 GACACCACTGAGAATG-TCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 1737781 Query 40809 GCAACGACTCATCTACG-CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| | || || | | |||| |||||||||| || | | ||| ||| ||||| | Sbjct 1737780 GCAGAGTCTGATTTTTGTGGGGCCAACAGCTGGAGGATGGTCACACTCTCTCAGACTATA 1737721 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||||||| ||| |||| ||||| | ||| | | || ||||||| Sbjct 1737720 ATATCCAGAAAGAGTCCACTCTGCACTTGGTGCTCCATCTGTGGGGCGG 1737672 >seq265 Length=2261556 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| || || || || ||||||||| |||| || ||| || Sbjct 840913 AAGATGCAGATTTTCGTGAAAACCCTTACCGGGAAGACCATCACCCTCGAGGTTGAACCC 840972 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| || || | || || || || || || | || Sbjct 840973 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 841032 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| ||| |||| || ||||| || ||||| || | || || | |||||| Sbjct 841033 CAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 841092 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| |||| || ||||| |||||| Sbjct 841093 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 841128 >seq808 Length=762264 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | ||||| || || || || ||||||||| |||| || ||| || | Sbjct 447812 ATGCAGATTTTCATGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTCA 447871 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| || || | || || || || || || | || ||| Sbjct 447872 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 447931 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| |||| || ||||| || ||||| || | | | | | ||||||||| Sbjct 447932 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATATCTTGTCTGACTACAAC 447991 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || || |||||| |||| || ||||| |||||| Sbjct 447992 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 448024 >seq73 Length=4601553 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/203 (69%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || | || || |||||||| |||||||| |||| ||||| ||| Sbjct 4089878 ATGCAGATCTTTGTGTAGACCCTGACGGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 4089937 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | |||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 4089938 GACACTACTAAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 4089997 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 | | || || | | |||||||||||||| || | || ||| | |||||| Sbjct 4089998 CTGCATCTGATTTTTGTTGGCAAACAGCTGGAGGA----TGGACTCTCTCAGCCTACAAT 4090053 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| ||||| Sbjct 4090054 ATCCAGAAAGAGTCCACTCTGCA 4090076 >seq331 Length=2147541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| | || || || ||||||||| || | | ||| || Sbjct 851239 AAGATGCAGATTTTCGTGAAAACCTTTACCGGGAAGACCATCACCCTCAAGGCTGAACCC 851298 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| || || | || || || || || || | || Sbjct 851299 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 851358 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| ||| |||| || ||||| || ||||| || | || || | |||||| Sbjct 851359 CAGCAAAGACAGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 851418 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| |||| || ||||| |||||| Sbjct 851419 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 851454 >seq210 Length=3024228 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || |||| ||||| || |||| ||||| | | Sbjct 2224560 ATGCAGATCTTCGTGAAGACCCTGACCAGCAAGACCATAACACTCGAGGTCGAGCCTAGT 2224501 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 2224500 GACACTATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 2224441 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || | | | ||||||||| ||||| || | | ||| ||| |||||||| Sbjct 2224440 CAGTGTCTGGTTTTTGTGGGCAAACAACTGGAGGATGTCCACACTCTCTCAGACTACAAT 2224381 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 | | |||| || |||| ||||| Sbjct 2224380 AACTAGAAACAGTCCACTCTGCA 2224358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515170440942960