Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 109 8e-19
seq717 105 1e-17
seq298 84.2 3e-11
>seq5307
Length=1324
Score = 109 bits (120), Expect = 8e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || || ||||| || || || | ||| | || | | |
Sbjct 729 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 788
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| ||| ||||| ||||| || || || || |||||||| ||
Sbjct 789 GACACTATTGAGAATGCCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 848
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || |||||||| || ||||| | |||||| | || || | ||| ||||||
Sbjct 849 CAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAT 908
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || ||||| || ||| | || ||||| | ||| | |||||||||||
Sbjct 909 ATCCAGAAAGAGTCCACTCTACACTTGGTGCTTCGTCTGCGAGGTGGTAT 958
>seq717
Length=839118
Score = 105 bits (116), Expect = 1e-17
Identities = 162/230 (70%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || || ||||| || || || | ||| | || | | |
Sbjct 563669 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 563610
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| ||||| ||||| || || || || |||||||| ||
Sbjct 563609 GACACTATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 563550
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || ||||||||||| ||||| | |||||| | || || | ||| | ||||
Sbjct 563549 CAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTGTAAT 563490
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || ||||| || ||| |||| ||||| | ||| | ||| |||||||
Sbjct 563489 ATCCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGA-GTGGTAT 563441
>seq298
Length=2265018
Score = 84.2 bits (92), Expect = 3e-11
Identities = 158/230 (69%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| | ||| | ||||| || || ||||| || || || ||| | || | | |
Sbjct 584822 ATGCAGACCTTTGTGAAGACCCTGACGGGCAAGACCATCACACCTGAGGTCGAGCCCAGT 584763
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| ||| | ||||| || || || || |||||||| ||
Sbjct 584762 GACACTATTGAGAATGTCAAAGCTAAA-TCCAAGACAAGGAGGGCATCCCACCTGACCAG 584704
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || ||||||| || ||||| | |||||| | || || | || || |||
Sbjct 584703 CAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCT--GACTAGAAT 584646
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || ||||| || ||| |||| ||||| | ||| | |||||||||||
Sbjct 584645 ATCCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGAGGTGGTAT 584596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755384505532800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |