Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq170 100 5e-16 >seq170 Length=2938728 Score = 100 bits (110), Expect = 5e-16 Identities = 101/128 (79%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | |||||||| |||||||| ||||||||| | || || || Sbjct 964480 GCATTTTTTGGAGCCCAGATGAATTCTTTCATCCATGTGATTATGTACTCCTACTACGGG 964421 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 || | || |||||| ||| ||||||| |||||| ||||||||||| || || || | Sbjct 964420 TTGACTGCGCTTGGTCC-ATGGATTCAGAA-GTATCTTTGGTGGAAACGGTACCTGACCA 964363 Query 52175 TAATGCAG 52182 | ||||| Sbjct 964362 TGTTGCAG 964355 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 52204 ATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCAAAATGGATACAGTGG 52263 || ||||| || || |||| |||||| |||||||| || ||||||||||| || ||| Sbjct 961571 ATTGGACACACAGCGCTGTCTCTTTACACCGATTGCCCCTTCCCAAAATGGATGCACTGG 961512 Query 52264 TCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAACTTCTATTTTAGAACA 52323 | | ||| |||| | || || |||||| | || ||| |||||||||| || | ||| Sbjct 961511 GCTCTCATTGCCTATGCCATCAGCTTCATAGTTCTCTTTCTTAACTTCTATATTCGGACA 961452 Query 52324 TACAA 52328 ||||| Sbjct 961451 TACAA 961447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923109430962840