Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5307 107 2e-18 seq129 100 3e-16 seq1241 98.7 1e-15 seq458 98.7 1e-15 seq325 98.7 1e-15 seq298 96.9 4e-15 seq64 89.7 6e-13 >seq5307 Length=1324 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | |||||| || | ||| ||| || || ||||| || || | Sbjct 955 CCACCTCGCAGACGAAGCACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAG 896 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| || || || || || || ||||||||||| | || Sbjct 895 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG 836 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| |||||| |||| || | | ||||| || | || || Sbjct 835 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGGCATTCTCAATAGTGTCACTGGGCTCGACC 776 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| |||||||| || ||||| |||||||| ||||| Sbjct 775 TCAAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 729 >seq129 Length=3840824 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 538945 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 538886 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 538885 TACTAACGAGGAT 538873 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 554101 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 554042 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 554041 TACTAACGAGGA 554030 >seq1241 Length=281424 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 271604 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 271545 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 271544 TACTAACGAGGA 271533 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 275782 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 275723 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 275722 TACTAACGAGGA 275711 >seq458 Length=1662263 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1194329 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 1194270 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 1194269 TATACTAACGAGGA 1194256 >seq325 Length=1976410 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1943138 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1943197 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1943198 TACTAACGAGGA 1943209 >seq298 Length=2265018 Score = 96.9 bits (106), Expect = 4e-15 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | |||||| |||| ||| ||| || || ||||| || |||| Sbjct 584599 CCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAG-- 584656 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| || || | || || || ||||||||||| | || Sbjct 584657 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGG 584716 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||| | || ||| ||||| || | | ||||| || | || || Sbjct 584717 ATGCCCTCCTTGT-CTTGGATTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACC 584775 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| |||||||| || ||||| |||||| | ||||| Sbjct 584776 TCAGGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGGTCTGCAT 584822 >seq64 Length=4972025 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1953518 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1953577 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1953578 TACTAACGAGGA 1953589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571763484611880