Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq331 89.7 8e-13
seq265 89.7 8e-13
seq808 87.8 3e-12
seq376 84.2 3e-11
>seq331
Length=2147541
Score = 89.7 bits (98), Expect = 8e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || || || || || ||
Sbjct 851468 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 851410
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| || |||||||| ||| |||||||||||| |||||
Sbjct 851409 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGATCAGGAGG 851350
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 851349 AATTCCTTCCTTATCCTG 851332
>seq265
Length=2261556
Score = 89.7 bits (98), Expect = 8e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || || || || || ||
Sbjct 841142 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 841084
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| || |||||||| ||| |||||||||||| |||||
Sbjct 841083 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 841024
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 841023 AATTCCTTCCTTATCCTG 841006
>seq808
Length=762264
Score = 87.8 bits (96), Expect = 3e-12
Identities = 106/139 (76%), Gaps = 4/139 (3%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || || || || || ||
Sbjct 448038 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 447980
Query 146110 AAGAGTTCTG-CTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| || | || | ||| || | ||| || |||||||| |||| |||||||||||| ||||
Sbjct 447979 CA-AGATATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 447921
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||||||||| ||||| ||
Sbjct 447920 GAATTCCTTCCTTATCCTG 447902
>seq376
Length=1527771
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || || || || || ||
Sbjct 1196509 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 1196451
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | ||| || | ||| || |||| ||| |||| |||||||||||| |||||
Sbjct 1196450 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGTAAAGATCAGTCTTTGCTGATCAGGAGG 1196391
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 1196390 AATTCCTTCCTTATCCTG 1196373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743456034520320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |