Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5307 114 8e-21 seq717 104 2e-17 seq298 95.1 8e-15 >seq5307 Length=1324 Score = 114 bits (126), Expect = 8e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||||| ||| |||||||| || || ||||| || Sbjct 955 CCACCTCGCAGACGAAGCACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAG 896 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||| ||||| || ||||| || ||||||||||| || Sbjct 895 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG 836 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || ||| ||||| | || | || | || | | ||||| Sbjct 835 ATGCCCTCCTTGTCTTGGAT-TTTAGCTTTGGCATTCTCAATAGTGTCACTGGGCTCGAC 777 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| || || || |||||||||||||||||| || Sbjct 776 CTCAAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 725 >seq717 Length=839118 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 34169 CGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGA 34228 ||||| | ||||||| ||| | ||| |||||||| || || |||| || || Sbjct 563449 CGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTACAGTCTGAGAGAGTG 563508 Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 ||| | || |||| ||| |||||||| ||||| || |||||||||| || | || | Sbjct 563509 CGGCCATCCTCCAGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCC 563568 Query 34289 TCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCAC 34347 |||||||| || ||| ||||| | || | || | || | | ||||| || | Sbjct 563569 TCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCAAG 563627 Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 |||||||| ||||| || || || |||||||||||||||||| || Sbjct 563628 TGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 563673 >seq298 Length=2265018 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| |||||||| || || ||||| || Sbjct 584599 CCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAGAG 584658 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || ||| | || |||| ||| ||||| | ||||| || ||||||||||| || Sbjct 584659 AG-TG-CGGCCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGG 584716 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| | ||| ||||| | || | || | || | | ||||| Sbjct 584717 ATGCCCTCCTTGTC--TTGGATTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGAC 584774 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || |||||||| ||||| || || || ||||||||| |||||||| || Sbjct 584775 CTCAGGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGGTCTGCATCTCT 584826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323042189641760