Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 114 8e-21
seq717 104 2e-17
seq298 95.1 8e-15
>seq5307
Length=1324
Score = 114 bits (126), Expect = 8e-21
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||| ||||| ||| |||||||| || || ||||| ||
Sbjct 955 CCACCTCGCAGACGAAGCACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGAG 896
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| ||| ||||| || ||||| || ||||||||||| ||
Sbjct 895 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG 836
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| || ||| ||||| | || | || | || | | |||||
Sbjct 835 ATGCCCTCCTTGTCTTGGAT-TTTAGCTTTGGCATTCTCAATAGTGTCACTGGGCTCGAC 777
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| | |||||||| ||||| || || || |||||||||||||||||| ||
Sbjct 776 CTCAAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 725
>seq717
Length=839118
Score = 104 bits (114), Expect = 2e-17
Identities = 160/226 (71%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 34169 CGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGA 34228
||||| | ||||||| ||| | ||| |||||||| || || |||| || ||
Sbjct 563449 CGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTACAGTCTGAGAGAGTG 563508
Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288
||| | || |||| ||| |||||||| ||||| || |||||||||| || | || |
Sbjct 563509 CGGCCATCCTCCAGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCC 563568
Query 34289 TCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCAC 34347
|||||||| || ||| ||||| | || | || | || | | ||||| || |
Sbjct 563569 TCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCAAG 563627
Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|||||||| ||||| || || || |||||||||||||||||| ||
Sbjct 563628 TGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 563673
>seq298
Length=2265018
Score = 95.1 bits (104), Expect = 8e-15
Identities = 163/232 (70%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||| ||| | ||| |||||||| || || ||||| ||
Sbjct 584599 CCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAGAG 584658
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || ||| | || |||| ||| ||||| | ||||| || ||||||||||| ||
Sbjct 584659 AG-TG-CGGCCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGG 584716
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| | ||| ||||| | || | || | || | | |||||
Sbjct 584717 ATGCCCTCCTTGTC--TTGGATTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGAC 584774
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| |||||||| ||||| || || || ||||||||| |||||||| ||
Sbjct 584775 CTCAGGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGGTCTGCATCTCT 584826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323042189641760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |