Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq927 295 6e-75 seq138 104 2e-17 seq861 102 8e-17 >seq927 Length=612318 Score = 295 bits (326), Expect = 6e-75 Identities = 637/941 (68%), Gaps = 19/941 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| ||| ||| || | ||||||| ||| ||| Sbjct 153564 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATTC 153623 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||||||| |||||||| || || || ||||| | ||||||||| | Sbjct 153624 TCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 153683 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACA 16061 |||| || ||||| || |||| | || | | | | | || | |||| |||| || Sbjct 153684 CCATGAAGTCAAATGGGTTTTCT--ACTCT-GAAAATCTTGCTAAAACCCAGCTCCAGCA 153740 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | ||| || ||||||||||| || |||| ||||||||| || ||||| || || | Sbjct 153741 TAAGTCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGA 153800 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 || || || | ||| ||||| | || | | |||||| | || || | | |||| Sbjct 153801 GCTTCACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCATTGACAATTA 153860 Query 16182 TATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGTTTAAACATTATACAAG 16238 | ||| | ||| || | || ||| || || | |||||| ||||| | || | Sbjct 153861 TTTCTTTGACTTT-CTGCTC--CGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGG 153917 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||| ||||| || || || || || || || || | ||||| |||||||| || || | Sbjct 153918 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAG 153977 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 ||| ||||||| ||| || | ||| ||||| | ||||| |||||||||||||| || | Sbjct 153978 ACATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTC 154037 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctat 16416 |||| ||||||||||| || || | || || || || || || ||| | | | || Sbjct 154038 CTTCCACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCC--CCAAT 154095 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 ||| ||||||| ||| || | || ||||| ||| |||| || || || || Sbjct 154096 CCAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAA 154155 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 | | | | |||| ||| |||| |||||| || || | || | ||||||||| || Sbjct 154156 GAGACACTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTC 154215 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 ||||| | || ||||| || || || || ||||| || || | ||||| | || || Sbjct 154216 AGAATGTTTGTT-TCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTG 154274 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 | ||| | ||||| || | |||||||| || ||||| ||||| || || ||||| Sbjct 154275 AATTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAA 154334 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA-TCTGAAAGTTTTAACCAGTCAG 16715 || ||||| | || ||||||| | | || | | || | | || ||||| Sbjct 154335 GAAAGCAAGAACATGGGATATAAAATATCTCTCATCAGGCTTCAGGGCTT-CCCAGTGCT 154393 Query 16716 AAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTAT 16775 | || || || | ||| || || || | |||||||| ||||| | || || |||| Sbjct 154394 GGAGGTCCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTAT 154453 Query 16776 ACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 |||| | ||| || || | ||| | |||||||| || ||| Sbjct 154454 ACATCTGCCAAATATCATGGTATTCGATAGGAAAGACGACA 154494 >seq138 Length=3455650 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | ||||| |||||||| || || ||||| ||||||||||| || Sbjct 2542792 TCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 2542851 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||||||||| || Sbjct 2542852 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAGCC 2542911 Query 16379 AC 16380 || Sbjct 2542912 AC 2542913 >seq861 Length=819057 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | || ||| |||| | Sbjct 784519 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATCACTGCAAAAC 784460 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 784459 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 784400 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 784399 CCATAAAATCAAAGGGATTTTCTG 784376 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| ||| Sbjct 780495 ATCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 780436 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | ||| || | |||||||||||||| Sbjct 780435 AATTCATTCCAATGAGCCCAACTGGCAAGGCTTCTGTTAAAAA 780393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462468229020600