Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq927 295 6e-75
seq138 104 2e-17
seq861 102 8e-17
>seq927
Length=612318
Score = 295 bits (326), Expect = 6e-75
Identities = 637/941 (68%), Gaps = 19/941 (2%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||| || ||| ||| | | ||| ||| ||| || | ||||||| ||| |||
Sbjct 153564 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATTC 153623
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
| ||||| || | |||||||| |||||||| || || || ||||| | ||||||||| |
Sbjct 153624 TCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 153683
Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACA 16061
|||| || ||||| || |||| | || | | | | | || | |||| |||| ||
Sbjct 153684 CCATGAAGTCAAATGGGTTTTCT--ACTCT-GAAAATCTTGCTAAAACCCAGCTCCAGCA 153740
Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121
| ||| || ||||||||||| || |||| ||||||||| || ||||| || || |
Sbjct 153741 TAAGTCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGA 153800
Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181
|| || || | ||| ||||| | || | | |||||| | || || | | ||||
Sbjct 153801 GCTTCACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCATTGACAATTA 153860
Query 16182 TATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGTTTAAACATTATACAAG 16238
| ||| | ||| || | || ||| || || | |||||| ||||| | || |
Sbjct 153861 TTTCTTTGACTTT-CTGCTC--CGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGG 153917
Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298
|||| ||||| || || || || || || || || | ||||| |||||||| || || |
Sbjct 153918 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAG 153977
Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358
||| ||||||| ||| || | ||| ||||| | ||||| |||||||||||||| || |
Sbjct 153978 ACATCAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTC 154037
Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctat 16416
|||| ||||||||||| || || | || || || || || || ||| | | | ||
Sbjct 154038 CTTCCACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCC--CCAAT 154095
Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476
||| ||||||| ||| || | || ||||| ||| |||| || || || ||
Sbjct 154096 CCAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAA 154155
Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536
| | | | |||| ||| |||| |||||| || || | || | ||||||||| ||
Sbjct 154156 GAGACACTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTC 154215
Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596
||||| | || ||||| || || || || ||||| || || | ||||| | || ||
Sbjct 154216 AGAATGTTTGTT-TCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTG 154274
Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656
| ||| | ||||| || | |||||||| || ||||| ||||| || || |||||
Sbjct 154275 AATTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAA 154334
Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA-TCTGAAAGTTTTAACCAGTCAG 16715
|| ||||| | || ||||||| | | || | | || | | || |||||
Sbjct 154335 GAAAGCAAGAACATGGGATATAAAATATCTCTCATCAGGCTTCAGGGCTT-CCCAGTGCT 154393
Query 16716 AAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTAT 16775
| || || || | ||| || || || | |||||||| ||||| | || || ||||
Sbjct 154394 GGAGGTCCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTAT 154453
Query 16776 ACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816
|||| | ||| || || | ||| | |||||||| || |||
Sbjct 154454 ACATCTGCCAAATATCATGGTATTCGATAGGAAAGACGACA 154494
>seq138
Length=3455650
Score = 104 bits (114), Expect = 2e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | ||||| |||||||| || || ||||| ||||||||||| ||
Sbjct 2542792 TCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 2542851
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| ||||| |||||||| || ||||| ||||||||||| ||
Sbjct 2542852 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAGCC 2542911
Query 16379 AC 16380
||
Sbjct 2542912 AC 2542913
>seq861
Length=819057
Score = 102 bits (112), Expect = 8e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || ||||||||| | | | || ||| |||| |
Sbjct 784519 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATCACTGCAAAAC 784460
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| || ||||||||||||||||| |||||||| ||||| ||||
Sbjct 784459 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 784400
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 784399 CCATAAAATCAAAGGGATTTTCTG 784376
Score = 82.4 bits (90), Expect = 7e-11
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106
|||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| |||
Sbjct 780495 ATCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 780436
Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149
| |||||||| || | ||| || | ||||||||||||||
Sbjct 780435 AATTCATTCCAATGAGCCCAACTGGCAAGGCTTCTGTTAAAAA 780393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462468229020600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |