Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq277 1772 0.0 seq125 143 2e-29 >seq277 Length=2549824 Score = 1772 bits (1964), Expect = 0.0 Identities = 1378/1645 (84%), Gaps = 35/1645 (2%) Strand=Plus/Plus Query 107136 AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCA 107195 ||| || |||||||| ||||| ||||||||||||||| |||||||||| ||| ||| ||| Sbjct 1986376 AGGCTCCTAGGCAGGTCTTGAATGAGGATATTTGTCTCTAGAAGACATATATTTTTGCCA 1986435 Query 107196 TCACTCTGGAGTTGAACTTGATGTTC--------------TGGATTAGTTTGTAATTAAA 107241 ||||| |||||||||||||||||||| || ||||||||||||| || Sbjct 1986436 TCACTTTGGAGTTGAACTTGATGTTCCTGGGAAAACATTTAGGGTTAGTTTGTAATTGAA 1986495 Query 107242 GGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGA 107301 ||||||||||||||| ||||||| | || ||| |||| ||||||||||||||| |||| Sbjct 1986496 GGCATTTTGTTCTGTTCAAGGATTCCATCGTCCTCCTTCCCTGTGCCCAAACTCGACTGA 1986555 Query 107302 TCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGT 107361 ||| |||| |||||||||| | ||||||||||||| || |||||| ||| | |||| Sbjct 1986556 TCTTCCATTACATGAAGATGATTTGGTGGAAGAAGAAACTCTGCCGGCAGCATTACCTGT 1986615 Query 107362 GGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTA 107421 |||| |||||||||||| | ||||| ||| ||||| |||||| |||||| ||||| || Sbjct 1986616 GGGCTCTGGGCTGCTATTTCCTGCTAGCCATTGTTGCTCTGAAACTTTCTCTCAGATTGC 1986675 Query 107422 AATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGG 107481 ||||||| | |||||| |||||||||||||||||||||| | || |||||||||||| Sbjct 1986676 AATGTGACTTTGATTCCCTGGATCTGGAGTCCAGGGACTTTCGAAGCAAGCACTGTAGGG 1986735 Query 107482 ACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCA 107541 |||| |||||| | ||||||| |||||||||| ||| ||| ||||||||| | |||| Sbjct 1986736 ACATCTTGTACGAGTCCCTGAAGTTGCCAGCAAAAAGACTCATAAACTGTTCTCGAATCA 1986795 Query 107542 CGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAA 107601 | ||||||||||||||||||||| |||| ||||| ||||||||||| |||||||| | Sbjct 1986796 CCCGAGGGGACCAGGAAGCAGTGACTGAGGCTCTCCTGGACAACCTGGATGTGAAGAAGA 1986855 Query 107602 AGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCA 107661 ||||| |||| |||| | |||| | ||||||||||| |||||||||||||||| ||| | Sbjct 1986856 AGCGGAAGCCTTTCACAGACACCGACTACCTCAACATGACCAGAGACTGTGAGCACTTTA 1986915 Query 107662 AGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTG 107721 |||||||||||||||||||||||| ||||| || ||||| ||| | |||||||| |||| Sbjct 1986916 AGGCCCAAAGGAAGTTCATACAGTATCCACTCAGCAAAGAGGAGGTGGACTTCCCTATTG 1986975 Query 107722 CCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT 107781 | | ||| |||||||| ||||||||||| |||||||| ||| |||||||| |||| |||| Sbjct 1986976 CATTCTCTATGGTGGTACATGAGAAGATCGAAAACTTCGAAAGGCTGCTGAGAGCTGTGT 1987035 Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| Sbjct 1987036 ATGCCCCTCAGAACATATATTGTGTCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAG 1987095 Query 107842 AGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCC 107901 |||| ||| |||| |||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1987096 AGGCAGTCCAGGCAATTATTTCATGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGCTC 1987155 Query 107902 CGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGC 107961 ||||||||||||||| ||||| || ||||| |||||||||||||||||||| ||||| | Sbjct 1987156 GGGTGGTTTATGCCTCTTGGTCTAGGGTGCAGGCTGACCTGAACTGTATGGAGGACTTAC 1987215 Query 107962 TCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAA 108021 |||||||||||||||| ||||| ||||| |||||||||||||| |||||||| || |||| Sbjct 1987216 TCCAGAGCTCAGTGCCGTGGAAATACTTCCTGAATACATGCGGAACAGACTTTCCTATAA 1987275 Query 108022 AGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGT 108081 ||||||||||||||||||||||| |||||||||||||||| || ||||| |||||||||| Sbjct 1987276 AGACCAATGCCGAGATGGTCCTGACCCTCAAGATGTTGAAAGGGAAGAATAGTATGGAGT 1987335 Query 108082 CTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACA 108141 | ||| || ||| |||||||| | |||||||||||| | ||||||||||||||||| Sbjct 1987336 CAGAGACAC---CTGGGTCCAAAATATCTCGCTGGAAATATCACTATGAGGTGACAGACA 1987392 Query 108142 CACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAG 108201 || | | | |||| |||||||||||||||||| ||| |||||||||| ||||||| || Sbjct 1987393 CAGTATCCATAACCAACAAGATGAAGGACCCTCCGCCTTATAATTTACCTATGTTCATAG 1987452 Query 108202 GGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAAT 108261 ||||||||||| | ||||| ||||||| |||||||||||| |||||||| ||||| |||| Sbjct 1987453 GGAATGCCTATATCGTGGCTTCTCGAGGCTTTGTCCAACAGGTCTTAGAGAACCCCAAAT 1987512 Query 108262 CCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCA 108321 | | | |||| | ||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1987513 CACGACAACTGATCGAATGGGCAAAAGACACCTATAGCCCCGATGAACACCTCTGGGCCA 1987572 Query 108322 CCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCT 108381 ||||||| |||||||| |||||||||||||| ||||| ||||||||||| |||| || Sbjct 1987573 CCCTTCATCGTGCTCCATGGATGCCTGGCTCCATTCCTTACCACCCCAAGTTCCACACCT 1987632 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | |||||| ||||||| |||||||| ||||||||| |||||||||| ||||| ||||||| Sbjct 1987633 CGGACATGGCTGCCATTGCCAGGCTGGTCAAGTGGGAGTACCACGAAGGAGACGTCAGCA 1987692 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||||||| ||||||| ||| |||||||||| ||| | | || ||||||||||| ||| Sbjct 1987693 TGGGGGCACCTTATGGACCTTGCTCTGGAACCCACCAGCGGAGTATCTGCATTTATGGGA 1987752 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGA 108561 | ||||||||| ||||||| || || | || |||||| ||||| |||||||||||||| | Sbjct 1987753 CTGGGGACCTGCACTGGATGCTTCAAAGCCCTCACCTGTTGGCCAACAAGTTTGACCCCA 1987812 Query 108562 GGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATG 108621 |||||||||||| || || |||||||||||||| ||| ||||| ||||||||||||||| Sbjct 1987813 AGGTGGATGATAATGTTCTTCAGTGCTTAGAAGAATACTTACGTTATAAGGCCATCTATG 1987872 Query 108622 GGACTGAACTTTGA----------------GCTGCACTGTGGGCCAGGGAC-TGTGCCAA 108664 |||||||||| ||| ||| ||||||| |||| || ||||| || Sbjct 1987873 GGACTGAACTCTGACATACATTATGAGAGGATTGCCCTGTGGGGCAGGAACATGTGCAAA 1987932 Query 108665 CATGCCCAGGGCGTACTGGTAC-TGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGG 108723 ||||||||| || |||| || || ||| |||| ||| |||||| |||| || |||| Sbjct 1987933 CATGCCCAGATTGTGCTGGGACAACTGAGGGTTGGGAGACCAGGGCTCTGGAGTCTATGG 1987992 Query 108724 CATCCCCCAGGGTCAGAGGGCTGCT 108748 ||||||||||||| || |||||||| Sbjct 1987993 CATCCCCCAGGGTAAGGGGGCTGCT 1988017 >seq125 Length=3779757 Score = 143 bits (158), Expect = 2e-29 Identities = 575/894 (64%), Gaps = 45/894 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| | | || || || || || || || ||||| ||| | ||| Sbjct 17717 CCCCTTAGTAAAGAAGAGGCAAAGTTTCCAATAGCATATTCCATAGTGGTTCATCACAAG 17776 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| ||||| |||| ||||| ||| | ||| |||||||| | || || | Sbjct 17777 ATTGAAATGTTTGACAGGCTCCTGCGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 17836 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || || | || | || || | | |||| ||||| Sbjct 17837 CATGTGGACAAAAAATCAGAGGATTCCTTTTTGGCTGCAGTGATTGGCATTGCATCCTGT 17896 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| |||||||| || ||| | ||||| ||||| || ||| | Sbjct 17897 TTCAGTAATGTCTTTGTGGCCAGTCAGCTGGAGACCGTGGTGTATGCATCGTGGAGTCGG 17956 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || ||||| || ||||||||| | ||| | || |||| | ||||| ||||||| Sbjct 17957 GTTCAGGCTGATCTCAACTGTATGCAGGACCT-CTACAGAA-TGAGTGCAGATTGGAAGT 18014 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || || || || || ||||| || || ||| | Sbjct 18015 ACTTGATAAATCTTTGCGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 18074 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| | | ||| | |||| | | || ||||| | || || | | Sbjct 18075 AACTCAAGTCACTAATGGGAGAAAACAATCTCGAAACTGAGAAAATGCCATCCAAT---A 18131 Query 108103 aaaaaaaTCGCTGGAAA--------TACCGCT----ATG---AGGTGACAGACACACTGT 108147 ||||| | | |||||| ||| | | ||| || ||||| ||||| | Sbjct 18132 AAAAAGAAAGGTGGAAAAAACATTATACAGTTGTTAATGGAAAGCTGACAAACACAGGG- 18190 Query 108148 ACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATG 108207 || ||| | || ||||| | ||| | ||| |||| |||| | || Sbjct 18191 -----ACTGACAAACTACAG---CCTCCTCTTGAAAC---ACCTCTGTTTTCAGGCAGTG 18239 Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAA 108267 |||||||||||| | | | | ||| | | || |||| || ||| ||||| Sbjct 18240 CCTATTTTGTGGTCAGTAGGAAATATGTGGAGTACGTGCTAGAGAATGAAAAAATCCAAA 18299 Query 108268 GACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTC 108327 | | || |||| |||||||| || ||||| || || | ||||||||||| ||| Sbjct 18300 AGTTTATGGAGTGGGCAAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTC 18359 Query 108328 AGCGTGCTCCGTGGA-TGCCTGGCTC--TGTTCCTA-GCCACCCCAAGTATCACATCTCA 108383 || | | ||| || | | || || || ||| |||| |||| |||||| |||| || Sbjct 18360 AGAG-GATCCCTGAAGTCCCAGGATCACTGTCCCTAAGCCAT---AAGTATGACATGTCC 18415 Query 108384 GACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATG 108443 |||||| ||| || || ||| | ||||||||||||||| || || ||||| || | Sbjct 18416 GACATGCATGCAATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAG 18475 Query 108444 GGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCC 108503 || || || || | |||||| || ||||| | | || | || ||| || || Sbjct 18476 GGCGCCCCCTACCCGCCCTGCAACGGCGTCCATGTGCGCTCCGTGTGTGTTTTTGGAGCA 18535 Query 108504 GGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || ||| || ||||||| | | | || ||| | || || || ||||||||| Sbjct 18536 GGTGACTTGAACTGGATGTTGCGCATGCACCACTTGTTTGCCAATAAGTTTGAC 18589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348236664693654