Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq927 288 1e-72
seq138 123 2e-23
>seq927
Length=612318
Score = 288 bits (318), Expect = 1e-72
Identities = 634/939 (68%), Gaps = 15/939 (2%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || | || | | || || || || ||| |
Sbjct 153566 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCTATTCT 153624
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 153625 CTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 153684
Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034
||| || |||||||| ||| | | || | || | |||| || || | | |
Sbjct 153685 CATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCCAGCTCCAGCATAAG 153744
Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094
||| || || | || ||||| | || ||||||| |||||||| || || || ||
Sbjct 153745 TCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGCTT 153804
Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154
|| || | | | || | || || | |||||| ||||| | | || || |
Sbjct 153805 CACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCATTGACAATTATT-T 153863
Query 14155 CGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 14212
| | | |||| | ||||| | | | || ||||| || || | || |||||
Sbjct 153864 CTTTG-ACTTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAAG 153922
Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272
||||| || | ||||||||||| |||||||||||||| |||||||| | || | ||||
Sbjct 153923 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACATC 153982
Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332
| ||||| ||| || | ||| ||||| | || || || || |||||||| ||||| ||
Sbjct 153983 AGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCC 154042
Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14392
||||| ||||| |||| | ||||||||| | | || | ||||| | |||||
Sbjct 154043 ACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGC 154102
Query 14393 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGT 14452
||||| || | || || || | | || |||||| ||||| || || || | |
Sbjct 154103 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAAGAGACAC 154162
Query 14453 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14512
||| | || || | | | ||| || || ||| | || | |||||||| ||||| |||
Sbjct 154163 TCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTCAGAATGT 154222
Query 14513 ATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572
|| ||||||| || || || || ||||| ||||| | ||||||| || | |||
Sbjct 154223 TTG-TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTCT 154281
Query 14573 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC- 14631
| ||| | || |||| |||||||| ||||| |||||||| || ||||| || ||
Sbjct 154282 TGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCA 154341
Query 14632 -CAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCT--AA 14688
|| ||| | ||||| ||| ||| ||| | || || ||| | ||| |
Sbjct 154342 AGAACATGGGAT--ATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAGT--GCTGGAG 154397
Query 14689 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748
||||| || ||||| ||||| ||| |||||||||| ||| | ||||| ||||||||
Sbjct 154398 GTCCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACAT 154457
Query 14749 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787
||| || || | ||| |||||||| || |||||
Sbjct 154458 CTGCCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496
>seq138
Length=3455650
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| |||||||||||||| |||||||| | || ||||||| ||||||||| |
Sbjct 2542790 CCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2542849
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || || || ||||||||||| ||||| || ||||| ||||| |
Sbjct 2542850 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAG 2542909
Query 14346 CTATTAATCGTTCTCC 14361
| | | ||||||||
Sbjct 2542910 CCACAACACGTTCTCC 2542925
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || | || | | || || || |||||| |
Sbjct 2541260 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATTCT 2541318
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 2541319 CTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2541378
Query 13975 CATAAAATCAAATGGATTT 13993
||| || |||||||| |||
Sbjct 2541379 CATGAAGTCAAATGGGTTT 2541397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482299952018280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |