Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq331 93.3 3e-14
seq808 87.8 1e-12
seq376 86.0 5e-12
seq265 84.2 2e-11
>seq331
Length=2147541
Score = 93.3 bits (102), Expect = 3e-14
Identities = 173/253 (68%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | || || ||||| | || | ||||| || || |
Sbjct 851491 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACT 851432
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| ||||||||||||||||| | || || | |||||||| ||| ||||| ||| |||
Sbjct 851431 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 851372
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255
| ||||||| ||||| || | ||||||||||| || | ||| || | |
Sbjct 851371 TCTGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTT 851312
Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315
| | || || ||| || | | | ||||||| | || ||||| || ||||| || |
Sbjct 851311 CTATTGTATCCGAGGGTTCAGCCTTGAGGGTGATGGTCTTCCCGGTAAAGGTTTTCACGA 851252
Query 18316 AAATTTGCATTTT 18328
|||| ||||| ||
Sbjct 851251 AAATCTGCATCTT 851239
>seq808
Length=762264
Score = 87.8 bits (96), Expect = 1e-12
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | || || ||||| | || | ||||| || || |
Sbjct 448061 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACT 448002
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| ||||||||||||||||| | || | | | |||||||| ||| ||||| ||| |||
Sbjct 448001 CCTTTTGAATGTTGTAGTCAGACAAGATATGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 447942
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
| |||||||| ||||| || | |||||||||||
Sbjct 447941 TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 447905
>seq376
Length=1527771
Score = 86.0 bits (94), Expect = 5e-12
Identities = 109/149 (73%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 1196524 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 1196465
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | | |||||||| ||| ||||| | | |||| ||||||
Sbjct 1196464 ATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGTAAAGATCAGTCTT 1196405
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232
|| ||||| || | |||||||||||
Sbjct 1196404 TGCTGATCAGGAGGAATTCCTTCCTTATC 1196376
>seq265
Length=2261556
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || || || ||||||||||||||||| | || || | |||||||| |||
Sbjct 841118 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 841059
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| |||| ||||||| ||||| || | ||||||||||| || |
Sbjct 841058 TTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 840999
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | | | | || || ||| || || | ||||||| | || |||||
Sbjct 840998 GCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCGGTA 840939
Query 18303 AATGTTTTTACAAAAATTTGCATTTT 18328
| ||||| || ||||| ||||| ||
Sbjct 840938 AGGGTTTTCACGAAAATCTGCATCTT 840913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379308997336395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |