Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq331 93.3 3e-14 seq808 87.8 1e-12 seq376 86.0 5e-12 seq265 84.2 2e-11 >seq331 Length=2147541 Score = 93.3 bits (102), Expect = 3e-14 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| | || | ||||| || || | Sbjct 851491 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACT 851432 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | |||||||| ||| ||||| ||| ||| Sbjct 851431 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 851372 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | ||||||| ||||| || | ||||||||||| || | ||| || | | Sbjct 851371 TCTGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTT 851312 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 | | || || ||| || | | | ||||||| | || ||||| || ||||| || | Sbjct 851311 CTATTGTATCCGAGGGTTCAGCCTTGAGGGTGATGGTCTTCCCGGTAAAGGTTTTCACGA 851252 Query 18316 AAATTTGCATTTT 18328 |||| ||||| || Sbjct 851251 AAATCTGCATCTT 851239 >seq808 Length=762264 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| | || | ||||| || || | Sbjct 448061 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACT 448002 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || | | | |||||||| ||| ||||| ||| ||| Sbjct 448001 CCTTTTGAATGTTGTAGTCAGACAAGATATGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 447942 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | |||||||| ||||| || | ||||||||||| Sbjct 447941 TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 447905 >seq376 Length=1527771 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 1196524 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 1196465 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | | |||||||| ||| ||||| | | |||| |||||| Sbjct 1196464 ATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGTAAAGATCAGTCTT 1196405 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232 || ||||| || | ||||||||||| Sbjct 1196404 TGCTGATCAGGAGGAATTCCTTCCTTATC 1196376 >seq265 Length=2261556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || ||||||||||||||||| | || || | |||||||| ||| Sbjct 841118 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 841059 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| ||||||| ||||| || | ||||||||||| || | Sbjct 841058 TTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 840999 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | | | || || ||| || || | ||||||| | || ||||| Sbjct 840998 GCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCGGTA 840939 Query 18303 AATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| || ||||| ||||| || Sbjct 840938 AGGGTTTTCACGAAAATCTGCATCTT 840913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379308997336395