Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq927 156 4e-33 seq636 116 3e-21 seq265 96.9 3e-15 seq5307 93.3 4e-14 seq808 86.0 6e-12 seq331 82.4 7e-11 >seq927 Length=612318 Score = 156 bits (172), Expect = 4e-33 Identities = 585/902 (65%), Gaps = 29/902 (3%) Strand=Plus/Minus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 |||||| | ||||| || ||||| | || |||||| | ||||| || || || || || Sbjct 154496 TTTGTCGTCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCGGAGGCT 154437 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG-AGCGATTGGGATTCCCT 57658 || |||||||| | || ||||| || || || ||||| || ||| | ||||| |||| Sbjct 154436 TCCTTTTGGACAGCTGAGGAAGTGGATCTCTCCAAGGACCTCCAGC-ACTGGGAAGCCCT 154378 Query 57659 CAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGG 57718 || ||||||| ||||||| || || | || || || || || ||||| Sbjct 154377 GAAGCCTGATGAGAGATATTTTATATCCCATGTTCTTGCTTTCTTTGCTGCGAGTGATGG 154318 Query 57719 TATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAG 57778 || || || || || ||||| || | ||| |||||| | || | || || || | Sbjct 154317 CATAGTCAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAATTCAGATTACAGAAGCCCG 154258 Query 57779 ATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACT 57838 || || || || || ||| | ||||| |||| | ||||| || |||||| || || Sbjct 154257 CTGTTTCTATGGCTTCCAAATTGCCATGGAAA-CAAACATTCTGAGATGTATAGTCTCCT 154199 Query 57839 CATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA--CTGTTCAACGCGATCGAA 57896 || || ||||| | || || | | || || | || || |||||||| || || Sbjct 154198 CAATGACACGTATATTAAAGATTCCAAGGA--AAGGGAGTGTCTCTTCAACGCCATTGAG 154141 Query 57897 ACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT-----AAAAAGCG 57951 |||||||| || ||||||||||| ||| | | ||||| | |||| Sbjct 154140 ACAATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGTTGGATTGGGGACAAAG-- 154083 Query 57952 CCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTT 58011 ||| || | | || | | | || || ||||| || ||||| || ||||||| Sbjct 154082 ---AGGCTACCTATGGAGAACGTGTTGTAGCTTTTGCCGCAGTGGAAGGAATCTTCTTTT 154026 Query 58012 CGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGT 58071 | || ||||| | ||||| ||| | |||||| | || |||||| | ||||| || | Sbjct 154025 CTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAATGAGGACTGATGTCTGGCCTCACAT 153966 Query 58072 TTAGCAACGAGTTGATATCGC-GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATG 58130 || |||||| | || | || | || |||||| | || ||| ||||| ||||| ||| Sbjct 153965 TTTCCAACGAACTTAT-TAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATG 153907 Query 58131 TACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCG 58190 | | ||| | | | ||||| || | | || || || || | | || Sbjct 153906 TTCAAACACCTGATACACAAACCTTCGGAGCAGAAAGTCAAAGAAATAATTGTCAATGCT 153847 Query 58191 GTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC---GGTATG 58247 || ||| ||| | ||||| |||| || || | |||||| | |||| || ||| Sbjct 153846 GTAAGGATAGAACAGGAGTTCCTCACAGAGGCATTGCCGGTG---AAGCTCATTGGGATG 153790 Query 58248 AACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTG 58307 || ||| ||| ||| |||||| ||||| || ||||||||| |||| || ||| Sbjct 153789 AATTGCACTTTAATGAAGCAGTGCATTGAATTTGTGGCAGACAGACTTATGCTGGAGCTG 153730 Query 58308 ATTGGAGAGCGTCATTACAACACGA-AAAATCCGTTTGATTTTATGAATCTGATCTCGCT 58366 | ||| ||| | | | |||| || ||||| || ||| | || || || Sbjct 153729 GGT-TTTAGCAAGATTTTCAGAGTAGAAAACCCATTTGACTTCATGGAGAATATTTCACT 153671 Query 58367 CGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCA-AAAATACGGCGTGA 58425 || || ||||| ||||| || || || | ||| | || ||||| | |||| || |||| Sbjct 153670 GGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGAGAGTATCAGAGAATA-GGAGTGA 153612 Query 58426 TG 58427 || Sbjct 153611 TG 153610 >seq636 Length=1077480 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || ||||| Sbjct 900636 ACCTCATCTTTGCTTGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 900577 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || |||||||||||| || || || ||||| |||||||||||||| || || Sbjct 900576 CCCAGGTTCTGCTGGTTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTA 900517 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 900516 CCTGTCTCTGTCTGAGACTCAATGATGGC 900488 >seq265 Length=2261556 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| |||||||| Sbjct 840913 AAGATGCAGATTTTCGTGAAAACCCTTACCGGGAAGACCATCACCCTCGAGGTTGAACCC 840972 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 840973 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 841032 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | | || || |||||||| || ||||||| | | | ||| || || || Sbjct 841033 CAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 841091 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 841092 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 841133 >seq5307 Length=1324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || ||||| | || || || || Sbjct 729 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 788 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | | |||| | ||| |||||||| ||| | || || |||||| Sbjct 789 GACACTATTGAGAATGCCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 848 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||||||| |||| || ||| | || ||||| Sbjct 849 CAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAT 908 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || ||||| || |||| ||| | ||| | || |||| Sbjct 909 ATCCAGAAAGAGTCCACTCTACACTTGGTGCTTCGTCTGCGAGGTGGTA 957 >seq808 Length=762264 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||| | || || || || || || || |||||| |||| |||||||| || Sbjct 447812 ATGCAGATTTTCATGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTCA 447871 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || ||| |||||||| | || || || ||| Sbjct 447872 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 447931 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCT-ATGACTATGAGCGATTATAA 31371 || | || || || |||||||| || ||||||| || || || || || || Sbjct 447932 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATATCT-TGTCTGACTACAA 447990 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| || || ||||||||||| || | ||||| Sbjct 447991 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 448029 >seq331 Length=2147541 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || | || || || || |||||| || | | |||||| Sbjct 851239 AAGATGCAGATTTTCGTGAAAACCTTTACCGGGAAGACCATCACCCTCAAGGCTGAACCC 851298 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 851299 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 851358 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | | || || |||||||| || ||||||| | | | ||| || || || Sbjct 851359 CAGCAAAGACAGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 851417 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 851418 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 851459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445724213782320