Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq5788 387 5e-103 >seq5788 Length=1233 Score = 387 bits (428), Expect = 5e-103 Identities = 591/834 (71%), Gaps = 15/834 (2%) Strand=Plus/Minus Query 33316 TGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCGG 33375 |||| ||| |||| | |||||||| | || |||||||| | || | || | | | | Sbjct 842 TGAATCGCCCCGGCTTTTGTGGAGGCCGTTTCGTTTAAGTCAG-GCCGCCATGGC--CTG 786 Query 33376 CATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCG 33435 || || |||| || | ||||||||||||| || || |||||||||||||||| | Sbjct 785 ATTTGCTT-GTTGCTGGTGGAAGTTTGCCTCAGCCTCCGCAGGCGGGATATAGCCGATTG 727 Query 33436 GTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGG 33495 || ||| || || |||||||||||| |||||| || || |||| || || | Sbjct 726 AGCTCAGCAGGCGCTGGTGGTTGTACCAGTGCACCCATCTCAAGGTCGCCATCTCAACAG 667 Query 33496 ATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGA 33555 ||| | | ||||| | | || || ||||| || | ||||||||| ||||||| Sbjct 666 CTTCGCGGTTCTTCCATGATT---GACGGTGTATCAGCTCAGCCTTGTACAGCCCGTTGA 610 Query 33556 TCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGC 33615 | || || |||| || |||||||||||||||||| |||||| || ||||| || || | Sbjct 609 TAGTCTCAGCCAAGGCGTTGTCGTAGCTGTCGCCCTTGCTGCCAACCGAGGGTTCAATAC 550 Query 33616 CGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAAT 33675 ||||||| |||||||| ||| |||||||||| ||| || || || | |||| | Sbjct 549 CGGCCTCTGCCAGCCGCTCGGTGTAGCGAATCGAGACATACTGGCTGCCACGGTCGCTGT 490 Query 33676 GATGAATCAAAGTCCCGTCCTCGCC---CGGTTGGCGGGCGTACAGCGCTTGTTCAAGTG 33732 |||| |||| | || || ||| ||| |||||||| ||||| ||||| || || | Sbjct 489 GATGGATCAGA---CCACCCGCGCAATGCGGCTGGCGGGCATACAGGGCTTGCTCCAGAG 433 Query 33733 CATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGGG 33792 ||||||| || ||||| || |||| | ||||| ||||||||||| || || || | Sbjct 432 CATCCAGCACGAAGTCGGTCTTCATGCTGGTACTGACTCGCCAGCCAACGATCCGCCGCG 373 Query 33793 CGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAA 33852 | |||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||| | Sbjct 372 CAAACACGTCAATCACGAAGGCCACATACAGCCAGCCCTGCCAGGTCGACACGTACGTGA 313 Query 33853 AATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCCA 33912 | ||||||||||| |||||||| || ||||| || | |||||| || | || || |||| Sbjct 312 AGTCCGACACCCACAGCTGATTTGGACGGTCGGCATGGAACTGGCGCTGCACACGATCCA 253 Query 33913 GCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACTG-CG 33971 |||| | ||| | | ||| | ||| || || | || ||||| ||| | Sbjct 252 GCGGACAGAGCGACTTGTCGCCGGCCACCGTTGTTCGCATGACCTGGCCGCG-CCTGATG 194 Query 33972 CCACGCAAGCCCTGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCT 34031 || | || || | | ||||||||| | |||||||| | |||||| ||||| Sbjct 193 CCCTGTAATCCAGCCCGACGCATCAACCGCTCCACCGTGCATCTGGCCACCTCGGTGCCT 134 Query 34032 TCCCGGTTCATCTGCTTCCAGACCTTCGGCACGCCGTAGACCTGCATGTTGGCCTGCCAG 34091 || || | |||||||||||| ||| | |||| || ||||||||||| | ||| Sbjct 133 TCTCGCCGGAGCTGCTTCCAGACTTTCATCGCGCCATAACACTGCATGTTGGTGTCCCAT 74 Query 34092 ACACGCTTGATCTCCGGTTGCAAAAGCTCATCGCGTTTCGCGCGGGCGCAGCGT 34145 ||||||| ||| ||| | ||| ||||||||| || ||| ||| ||| Sbjct 73 ACACGCTGGATTTCCAGGATCAATGCGTCATCGCGTCGAGCACGGCAGCAACGT 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170656655627170