Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_003309.1
Length=53373
Score E
Sequences producing significant alignments: (Bits) Value
seq5788 387 5e-103
>seq5788
Length=1233
Score = 387 bits (428), Expect = 5e-103
Identities = 591/834 (71%), Gaps = 15/834 (2%)
Strand=Plus/Minus
Query 33316 TGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCGG 33375
|||| ||| |||| | |||||||| | || |||||||| | || | || | | | |
Sbjct 842 TGAATCGCCCCGGCTTTTGTGGAGGCCGTTTCGTTTAAGTCAG-GCCGCCATGGC--CTG 786
Query 33376 CATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCG 33435
|| || |||| || | ||||||||||||| || || |||||||||||||||| |
Sbjct 785 ATTTGCTT-GTTGCTGGTGGAAGTTTGCCTCAGCCTCCGCAGGCGGGATATAGCCGATTG 727
Query 33436 GTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGG 33495
|| ||| || || |||||||||||| |||||| || || |||| || || |
Sbjct 726 AGCTCAGCAGGCGCTGGTGGTTGTACCAGTGCACCCATCTCAAGGTCGCCATCTCAACAG 667
Query 33496 ATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGA 33555
||| | | ||||| | | || || ||||| || | ||||||||| |||||||
Sbjct 666 CTTCGCGGTTCTTCCATGATT---GACGGTGTATCAGCTCAGCCTTGTACAGCCCGTTGA 610
Query 33556 TCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGC 33615
| || || |||| || |||||||||||||||||| |||||| || ||||| || || |
Sbjct 609 TAGTCTCAGCCAAGGCGTTGTCGTAGCTGTCGCCCTTGCTGCCAACCGAGGGTTCAATAC 550
Query 33616 CGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAAT 33675
||||||| |||||||| ||| |||||||||| ||| || || || | |||| |
Sbjct 549 CGGCCTCTGCCAGCCGCTCGGTGTAGCGAATCGAGACATACTGGCTGCCACGGTCGCTGT 490
Query 33676 GATGAATCAAAGTCCCGTCCTCGCC---CGGTTGGCGGGCGTACAGCGCTTGTTCAAGTG 33732
|||| |||| | || || ||| ||| |||||||| ||||| ||||| || || |
Sbjct 489 GATGGATCAGA---CCACCCGCGCAATGCGGCTGGCGGGCATACAGGGCTTGCTCCAGAG 433
Query 33733 CATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGGG 33792
||||||| || ||||| || |||| | ||||| ||||||||||| || || || |
Sbjct 432 CATCCAGCACGAAGTCGGTCTTCATGCTGGTACTGACTCGCCAGCCAACGATCCGCCGCG 373
Query 33793 CGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAA 33852
| |||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||| |
Sbjct 372 CAAACACGTCAATCACGAAGGCCACATACAGCCAGCCCTGCCAGGTCGACACGTACGTGA 313
Query 33853 AATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCCA 33912
| ||||||||||| |||||||| || ||||| || | |||||| || | || || ||||
Sbjct 312 AGTCCGACACCCACAGCTGATTTGGACGGTCGGCATGGAACTGGCGCTGCACACGATCCA 253
Query 33913 GCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACTG-CG 33971
|||| | ||| | | ||| | ||| || || | || ||||| ||| |
Sbjct 252 GCGGACAGAGCGACTTGTCGCCGGCCACCGTTGTTCGCATGACCTGGCCGCG-CCTGATG 194
Query 33972 CCACGCAAGCCCTGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCT 34031
|| | || || | | ||||||||| | |||||||| | |||||| |||||
Sbjct 193 CCCTGTAATCCAGCCCGACGCATCAACCGCTCCACCGTGCATCTGGCCACCTCGGTGCCT 134
Query 34032 TCCCGGTTCATCTGCTTCCAGACCTTCGGCACGCCGTAGACCTGCATGTTGGCCTGCCAG 34091
|| || | |||||||||||| ||| | |||| || ||||||||||| | |||
Sbjct 133 TCTCGCCGGAGCTGCTTCCAGACTTTCATCGCGCCATAACACTGCATGTTGGTGTCCCAT 74
Query 34092 ACACGCTTGATCTCCGGTTGCAAAAGCTCATCGCGTTTCGCGCGGGCGCAGCGT 34145
||||||| ||| ||| | ||| ||||||||| || ||| ||| |||
Sbjct 73 ACACGCTGGATTTCCAGGATCAATGCGTCATCGCGTCGAGCACGGCAGCAACGT 20
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 170656655627170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |