Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq927 295 6e-75 seq861 111 1e-19 seq636 104 2e-17 >seq927 Length=612318 Score = 295 bits (326), Expect = 6e-75 Identities = 613/903 (68%), Gaps = 16/903 (2%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| || || | ||||| || | |||| || | || | Sbjct 153592 ATTCTCTGTTGGACTTGACATCACTCCTATTCTCTGATACTCTCCTACTC-TCTTCTCAA 153650 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| ||||| ||||| |||| |||||| ||| ||| || || | ||| Sbjct 153651 AGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGGTTTTCTACTC 153710 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| | || | |||| | ||| | | ||| ||||| || ||||| || ||| Sbjct 153711 TGAAAATCTTGCTAAAACCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCAATGCACT 153770 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||||| |||||||| || || || | |||||| | || |||| | |||| Sbjct 153771 GCTTCATTAAAGTGCAATTCATCCCAATGAGCTTCACCGGCAATGCCTCTGTGAGGAACT 153830 Query 11547 CCTTTTCTATATTAACCGCAT---CAATGATTA--TCGACGTTATAACTTCCTTAGATGG 11601 ||| |||||| | || |||| |||| ||| | ||| || | ||| || || Sbjct 153831 CCTGTTCTATCCTTACAGCATTGACAATTATTTCTTTGACTTTCTGC--TCC---GAAGG 153885 Query 11602 TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661 | |||| | ||||| ||||| | || ||||| ||||| |||||||| || ||||| Sbjct 153886 TTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCT 153945 Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721 || || ||||| || |||||||| | || | ||||| ||||| ||| || | ||| || Sbjct 153946 GCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACATCAGTCCTCATTTCTTGAGCCAGAA 154005 Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCT 11781 ||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||||| || | Sbjct 154006 TATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAAGCTACAACACG 154065 Query 11782 TTCTCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838 ||||||||| || ||| ||| ||||| ||||||||| || ||||| || Sbjct 154066 TTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTT 154125 Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTAC 11898 || || |||||| || || ||||| || | | | |||| | |||| | | Sbjct 154126 GACACAAGGCATTGTCTCAATGGCGTTGAAGAGACACTCCCTTTCCTTGGAATCTTTAAT 154185 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||| || || | | | ||||||||| || ||||| | ||||||| || ||||| || Sbjct 154186 ATACGTGTCATTGAGGAGACTATACATCTCAGAATG-TTTGTTTCCATGGCAATTTGGAA 154244 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||||||||| || || |||| | ||| | || ||| | ||| | || || Sbjct 154245 GCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTCTTGGCTAAACCGCTCCACCAAGTT 154304 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||||| || || |||||||| | ||||| || || || | ||| |||||| ||| | Sbjct 154305 TTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCAAGAACATGGGATATAAAATATCT 154364 Query 12079 TTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAAC 12138 || || | | ||||| | | | || || || | ||| ||||| ||| | Sbjct 154365 CTCATCAGGCTTCAGGGCTTCCCAGTGCTGGAGGTCCTTGGAGAGATCCACTTCCTCAGC 154424 Query 12139 GGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGG 12198 |||||||| ||| | | || |||||||| | ||| |||||||| || | ||||| Sbjct 154425 TGTCCAAAAGGAAGCCTCCGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGG 154484 Query 12199 GAA 12201 || Sbjct 154485 AAA 154487 >seq861 Length=819057 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 774704 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 774645 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| | Sbjct 774644 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 774585 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 774584 CCACCACCCTTTCCCC 774569 >seq636 Length=1077480 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 37122 TAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCT 37181 ||| |||| ||| |||||||| ||||| || || ||||| | || || || ||||| Sbjct 918569 TAGTTGTGATTTTCTCACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCT 918510 Query 37182 AGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCAT 37241 |||||||||||||||||||||||||| | | || |||| || || ||||||||||| Sbjct 918509 GGTATATGGTTCAATGGACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCAT 918450 Query 37242 TGGTGCTATTAGAAGGCTATTTCTCAATCCAT 37273 || || || || | ||||| || | |||| Sbjct 918449 CGGGGCAATAAGTAAACTATTCCTTATACCAT 918418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468480459984240