Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq927 295 6e-75
seq861 111 1e-19
seq636 104 2e-17
>seq927
Length=612318
Score = 295 bits (326), Expect = 6e-75
Identities = 613/903 (68%), Gaps = 16/903 (2%)
Strand=Plus/Plus
Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366
||||||| | | ||| | ||| || || | ||||| || | |||| || | || |
Sbjct 153592 ATTCTCTGTTGGACTTGACATCACTCCTATTCTCTGATACTCTCCTACTC-TCTTCTCAA 153650
Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426
| || |||||||| ||||| ||||| |||| |||||| ||| ||| || || | |||
Sbjct 153651 AGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGGTTTTCTACTC 153710
Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486
|||| | || | |||| | ||| | | ||| ||||| || ||||| || |||
Sbjct 153711 TGAAAATCTTGCTAAAACCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCAATGCACT 153770
Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546
| ||||||| |||||||| || || || | |||||| | || |||| | ||||
Sbjct 153771 GCTTCATTAAAGTGCAATTCATCCCAATGAGCTTCACCGGCAATGCCTCTGTGAGGAACT 153830
Query 11547 CCTTTTCTATATTAACCGCAT---CAATGATTA--TCGACGTTATAACTTCCTTAGATGG 11601
||| |||||| | || |||| |||| ||| | ||| || | ||| || ||
Sbjct 153831 CCTGTTCTATCCTTACAGCATTGACAATTATTTCTTTGACTTTCTGC--TCC---GAAGG 153885
Query 11602 TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661
| |||| | ||||| ||||| | || ||||| ||||| |||||||| || |||||
Sbjct 153886 TTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCT 153945
Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721
|| || ||||| || |||||||| | || | ||||| ||||| ||| || | ||| ||
Sbjct 153946 GCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACATCAGTCCTCATTTCTTGAGCCAGAA 154005
Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCT 11781
||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||||| || |
Sbjct 154006 TATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAAGCTACAACACG 154065
Query 11782 TTCTCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838
||||||||| || ||| ||| ||||| ||||||||| || ||||| ||
Sbjct 154066 TTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTT 154125
Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTAC 11898
|| || |||||| || || ||||| || | | | |||| | |||| | |
Sbjct 154126 GACACAAGGCATTGTCTCAATGGCGTTGAAGAGACACTCCCTTTCCTTGGAATCTTTAAT 154185
Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958
||| || || | | | ||||||||| || ||||| | ||||||| || ||||| ||
Sbjct 154186 ATACGTGTCATTGAGGAGACTATACATCTCAGAATG-TTTGTTTCCATGGCAATTTGGAA 154244
Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018
||||||||||| || || |||| | ||| | || ||| | ||| | || ||
Sbjct 154245 GCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTCTTGGCTAAACCGCTCCACCAAGTT 154304
Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078
||||| || || |||||||| | ||||| || || || | ||| |||||| ||| |
Sbjct 154305 TTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCAAGAACATGGGATATAAAATATCT 154364
Query 12079 TTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAAC 12138
|| || | | ||||| | | | || || || | ||| ||||| ||| |
Sbjct 154365 CTCATCAGGCTTCAGGGCTTCCCAGTGCTGGAGGTCCTTGGAGAGATCCACTTCCTCAGC 154424
Query 12139 GGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGG 12198
|||||||| ||| | | || |||||||| | ||| |||||||| || | |||||
Sbjct 154425 TGTCCAAAAGGAAGCCTCCGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGG 154484
Query 12199 GAA 12201
||
Sbjct 154485 AAA 154487
>seq861
Length=819057
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| |
Sbjct 774704 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 774645
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| |
Sbjct 774644 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 774585
Query 11772 CTACTACTCTTTCTCC 11787
| || || ||||| ||
Sbjct 774584 CCACCACCCTTTCCCC 774569
>seq636
Length=1077480
Score = 104 bits (114), Expect = 2e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 37122 TAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCT 37181
||| |||| ||| |||||||| ||||| || || ||||| | || || || |||||
Sbjct 918569 TAGTTGTGATTTTCTCACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCT 918510
Query 37182 AGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCAT 37241
|||||||||||||||||||||||||| | | || |||| || || |||||||||||
Sbjct 918509 GGTATATGGTTCAATGGACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCAT 918450
Query 37242 TGGTGCTATTAGAAGGCTATTTCTCAATCCAT 37273
|| || || || | ||||| || | ||||
Sbjct 918449 CGGGGCAATAAGTAAACTATTCCTTATACCAT 918418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468480459984240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |