Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq265 100 3e-16 seq331 95.1 1e-14 seq647 93.3 4e-14 seq808 89.7 5e-13 seq920 82.4 8e-11 >seq265 Length=2261556 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || | || | ||||| || || Sbjct 841118 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 841060 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||| | | ||||||||| ||||| || ||||| || || ||| || Sbjct 841059 CTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 841000 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || ||||| | ||| | ||||| ||||| Sbjct 840999 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCGGT 840940 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 840939 AAGGGTTTTCACGAAAATCTGCAT 840916 >seq331 Length=2147541 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || | || | ||||| || || Sbjct 851444 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 851386 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||| | | ||||||||| ||||| || ||||| || || ||| || Sbjct 851385 CTTGCCAGCAAAGATCTGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 851326 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || ||| | ||| | ||||| ||||| Sbjct 851325 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCCTTGAGGGTGATGGTCTTCCCGGT 851266 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| || ||||| Sbjct 851265 AAAGGTTTTCACGAAAATCTGCAT 851242 >seq647 Length=1105866 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| ||||||||||| || || || |||| || | ||||| || || || || Sbjct 850247 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTGCTTGCC 850189 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || | ||||||| | ||||||||| ||||| || ||||| || || ||| || || Sbjct 850188 AGTAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGACCTT 850129 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | ||| | ||| || | ||| || |||||| || || ||||| || || | ||| Sbjct 850128 TACATTTTCTATTGTATCTGAGGGTTCAGCCTCAAGAGTGACGGTCTTCCCAGTAAGCGT 850069 Query 139747 TTTTACGAATATTTGCAT 139764 || | ||| || ||||| Sbjct 850068 TTCCATGAAAATCTGCAT 850051 >seq808 Length=762264 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCA--TTGTGCTCGAGTCTTCGAGCT 139619 |||| || ||||| ||||||||||| || || || | || || | ||||| || | Sbjct 448014 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGATATG-TCCA-TCTTCCAGTT 447957 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 | || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| | Sbjct 447956 GCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 447897 Query 139680 TTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | |||| | ||| | ||| || | ||| || ||||| | ||| | ||||| || | Sbjct 447896 TGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCAG 447837 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | ||||| | ||| || ||||| Sbjct 447836 TAAGGGTTTTCATGAAAATCTGCAT 447812 >seq920 Length=534542 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCA 139630 |||| ||||||||||| || || || || | || | ||||| || || || |||||| Sbjct 150038 ACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCCAGCA 150096 Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690 ||||||| | ||||||||| ||||| || ||||| || | ||| || |||| Sbjct 150097 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATTCTGGATCTTGGCCTTTACA 150156 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 | ||| ||| || | ||| || |||| | ||| | ||||| || || | ||||| Sbjct 150157 TTTTCTTTTGTATCCGAGGGTTCAACCTTGAGGGTGATGGTCTTCCCAGTAAGGGTTTTC 150216 Query 139751 ACGAATATTTGCAT 139764 ||||| || ||||| Sbjct 150217 ACGAAAATCTGCAT 150230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496017053743200