Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq927 390 2e-103 seq138 132 7e-26 seq636 131 2e-25 seq1 109 8e-19 seq156 100 4e-16 >seq927 Length=612318 Score = 390 bits (432), Expect = 2e-103 Identities = 651/936 (70%), Gaps = 11/936 (1%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 |||| |||||| |||| | | |||| ||| ||| | || ||||| ||||| ||| Sbjct 153564 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATTC 153623 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || || || || || | || || || || ||||| || ||||||| ||| ||||| | Sbjct 153624 TCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 153683 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 ||||||| ||||| || || || | |||| || |||| |||| || || | Sbjct 153684 CCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCCAGCTCCAGCATAA 153743 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| || || |||||||| || | ||||| | |||||||| || || || | Sbjct 153744 GTCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGCT 153803 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | || || | ||| | || || || || ||||| || ||| |||| || || Sbjct 153804 TCACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCATTGACAATTATTT 153863 Query 49910 ATCTAACGGTTTCTTCACTC--GGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 | | || ||||| | | ||| || | | ||||| ||||||| || || || Sbjct 153864 CTTTGAC--TTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAA 153921 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 || ||||| | |||||| ||||| ||||| |||||||||||||| ||||| || | ||| Sbjct 153922 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACAT 153981 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 || || | || || ||||| ||||| || ||||| || |||||||||||||||||||| Sbjct 153982 CAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 154041 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACTT 50144 ||||||||||| || |||| | |||||||| | || |||| ||||| Sbjct 154042 CACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACG 154101 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 |||||||| |||||||| || ||||||||||| || || ||||| || |||||| | Sbjct 154102 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAAGAGACA 154161 Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264 | |||| || |||||||| ||| || || | | ||||||||||| || ||||| Sbjct 154162 CTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTCAGAATG 154221 Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 || |||| ||||| || || || || |||||||| | || || |||||||| | ||| Sbjct 154222 TTTG-TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTC 154280 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 | | ||| || || | || |||||||| ||||| || ||||| || ||||| || || Sbjct 154281 TTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGC 154340 Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 | ||||| |||||||| | | || | || | || | ||| | | || || Sbjct 154341 AAGAACATGGGATATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAGTGCTGGAGGTC 154400 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504 || || | ||| ||||| || |||||||||| || ||||| || || |||||||| | Sbjct 154401 CTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACATCTG 154460 Query 50505 CCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||| || ||||| |||| ||| || || | ||||| Sbjct 154461 CCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496 >seq138 Length=3455650 Score = 132 bits (146), Expect = 7e-26 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| |||||||||||||| ||||| || ||||| || || || || | Sbjct 2542790 CCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2542849 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || || ||||||||||||||||| ||||||||||| | Sbjct 2542850 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAG 2542909 Query 50102 CAACAA 50107 | |||| Sbjct 2542910 CCACAA 2542915 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| |||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 2544461 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 2544520 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || ||||| || | || || |||||||| | |||| Sbjct 2544521 AATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTAATCTGAATTTCT 2544566 >seq636 Length=1077480 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | Sbjct 918553 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATATGGTTCAATG 918494 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 918493 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 918434 Query 79180 CTATTTCTAAGACCGTA 79196 ||||| || | ||| || Sbjct 918433 CTATTCCTTATACCATA 918417 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 899269 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 899210 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| ||| Sbjct 899209 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGT 899150 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 899149 TCCAGGTAAATAGC 899136 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 ||| |||||||| || || | || | ||| | ||||| || || || || ||||| || Sbjct 906288 GTAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATA 906229 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 |||||||||||| || || | |||||| | || || ||| | || ||||| ||||| Sbjct 906228 ATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATA 906169 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 906168 CCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCG 906109 Query 79479 CTTATTAGA 79487 ||||| || Sbjct 906108 TTTATTTGA 906100 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||| | ||| | || | || || ||||| || | || |||||||| || |||||| Sbjct 891308 CTAGAAAGTTGTGGGCGGTTTGTACCAGCATTGAAGAGAGTGGGAGAAGCATGGGTAAAC 891249 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 || | ||||| || || ||||| || |||||||| | || ||||| || ||||| Sbjct 891248 CACCTCTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATC 891189 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCA 80472 || || | || | ||| ||||| || |||||||||||| Sbjct 891188 CCCACAGATACCCTCATCAACATATGTTGAGGTCTTTCA 891150 >seq1 Length=12387654 Score = 109 bits (120), Expect = 8e-19 Identities = 180/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 |||||| || ||||| ||| ||| | ||| | ||| ||||| | || |||||| Sbjct 7595573 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTC--ATCTAAAACTTAGACTTCC 7595516 Query 47761 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 47820 || | ||| |||||| | || |||| | | || ||||| || |||| || ||| | || Sbjct 7595515 TCTATTTCAGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 7595456 Query 47821 ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 47880 || | ||| | ||| ||| ||||| || | || || || ||||| || |||||| Sbjct 7595455 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAATATTTCCTCTGTAATCT 7595396 Query 47881 TCGTCTATTACACCACCTCCTATATCAATG---CCTTTTAGTGACAGTCCAGACCTAGGA 47937 || ||||| |||||| |||||||||||||| |||| | || ||||| | ||| Sbjct 7595395 TCATCTATGACACCAGCTCCTATATCAATGAAATATTTTGCAGCCAAGCCAGAACATGGA 7595336 Query 47938 GCTATTCTACCATAGCA 47954 ||| ||| |||||||| Sbjct 7595335 ACTACTCTTCCATAGCA 7595319 >seq156 Length=3029033 Score = 100 bits (110), Expect = 4e-16 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 |||||| || ||||| ||| ||||| ||| | ||| ||||| | ||| |||||| Sbjct 18943 TCCAGTGGAACCAAAACCTCCTGAGCCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 19000 Query 47761 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 47820 || | |||||||||| | || ||| | | || ||||| || |||| || ||| | || Sbjct 19001 TCTATTTCTGGATAAAA-ATCTGTTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 19059 Query 47821 ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 47880 || | ||| | ||| ||| ||||| || | || || || ||||| ||||||||| Sbjct 19060 ACTTCAAACTTTTCTTTGCCAA-ATTAAACAGTACAACACCAATATTTCCTCTATAATCT 19118 Query 47881 TCGTCTATTACACCACCTCCTATATCAATG 47910 || ||||| |||||| |||||| ||| ||| Sbjct 19119 TCATCTATGACACCAACTCCTACATCTATG 19148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718200824836440