Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq927 297 2e-75 seq138 129 6e-25 >seq927 Length=612318 Score = 297 bits (328), Expect = 2e-75 Identities = 633/938 (67%), Gaps = 13/938 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || || ||| | Sbjct 153566 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCTATTCT 153624 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 153625 CTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 153684 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 ||| || |||||||| ||| | | || | || | |||| || || | | | Sbjct 153685 CATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCCAGCTCCAGCATAAG 153744 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| || || | ||| ||||| | || ||||||| |||||||| || || || || Sbjct 153745 TCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGCTT 153804 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || || | | | || | || || | |||||| ||||| | | | ||| || Sbjct 153805 CACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCAT---TGACAATTAT 153861 Query 13823 TGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | | ||| | ||||| | | | || ||||| || || | || ||||| Sbjct 153862 TTCTTTGACTTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAA 153921 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||||| || | ||||||||||| |||||||||||||| |||||||| | || | ||| Sbjct 153922 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACAT 153981 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || ||||| ||| || | ||| ||||| | ||||| || || |||||||| ||||| || Sbjct 153982 CAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 154041 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||||| ||||| |||| | ||||||||| | | || | ||||| | ||||| Sbjct 154042 CACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACG 154101 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | || || || | | || |||||| ||||| || || || | | | Sbjct 154102 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAAGAGACA 154161 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 ||| | || || | | | ||| || || ||| | || | |||||||| ||||| || Sbjct 154162 CTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTCAGAATG 154221 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 | || ||||||| || || || || ||||| || || | ||||| | || | ||| Sbjct 154222 TTTG-TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTC 154280 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | ||| | || |||| |||||||| ||||| |||||||| || ||||| || || Sbjct 154281 TTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGC 154340 Query 14300 --CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA 14357 || ||| | ||||| ||| ||| ||| || || || ||| | | Sbjct 154341 AAGAACATGGGAT--ATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAGTGCTGGAGG 154398 Query 14358 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14417 ||||| || ||||| ||||| ||| |||||||||| ||| | ||||| |||||||| Sbjct 154399 TCCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACATC 154458 Query 14418 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||| || || | ||| |||||||| || ||||| Sbjct 154459 TGCCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496 >seq138 Length=3455650 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| |||||||||||||| |||||||| | || ||||||| ||||||||| | Sbjct 2542790 CCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2542849 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| ||||| || ||||| ||||| | Sbjct 2542850 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAG 2542909 Query 14014 CTATTAATCGTTCTCC 14029 | | | |||||||| Sbjct 2542910 CCACAACACGTTCTCC 2542925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || |||||| | Sbjct 2541260 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATTCT 2541318 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 2541319 CTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2541378 Query 13643 CATAAAATCAAATGGATTT 13661 ||| || |||||||| ||| Sbjct 2541379 CATGAAGTCAAATGGGTTT 2541397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479682599741400