Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq927 275 6e-69
seq138 123 2e-23
>seq927
Length=612318
Score = 275 bits (304), Expect = 6e-69
Identities = 628/937 (67%), Gaps = 11/937 (1%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || | || | | || || || || ||| |
Sbjct 153566 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCTATTCT 153624
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 153625 CTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 153684
Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490
||| || || ||||| ||| | | || | || | |||| || || | | |
Sbjct 153685 CATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCCAGCTCCAGCATAAG 153744
Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550
||| || || | ||| ||||| | || ||||||| |||||||| || || || ||
Sbjct 153745 TCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGCTT 153804
Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610
|| || | | | || | || || | |||||| ||||| | | || ||
Sbjct 153805 CACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCATTGACAATTATTTC 153864
Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670
|| | | | | ||||| | | | || ||||| || || | || ||||| ||
Sbjct 153865 TTTGACTTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAAGTC 153924
Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730
||| || | ||||||||||| |||||||||||||| |||||||| | || | |||||
Sbjct 153925 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACATCAG 153984
Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790
||||| ||| || | ||| ||||| | || || || || |||||||| ||||| || ||
Sbjct 153985 TCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 154044
Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850
||| ||||| |||| | ||||||||| | | || | ||||| |||||
Sbjct 154045 TGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCAA 154104
Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910
||||| || | || || || | | || |||||| || || || ||||| | | ||
Sbjct 154105 GGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAAGAGACACTC 154164
Query 13911 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970
| | || || | | | ||| || || ||| | || | |||||||| ||||| ||| |
Sbjct 154165 CCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTCAGAATGTTT 154224
Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGA 14030
| |||| || || || || || ||||| ||||| | ||||||| || | ||
Sbjct 154225 G-TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTCTTG 154283
Query 14031 GTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC--C 14088
| ||| | || ||||||||||||| || || |||||||| || ||||| || ||
Sbjct 154284 GCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCAAG 154343
Query 14089 AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCT--AAAT 14146
|| ||| | ||||| ||| ||| ||| || || || ||| | ||| | |
Sbjct 154344 AACATGGGAT--ATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAGT--GCTGGAGGT 154399
Query 14147 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTA 14206
|||| || ||||| ||||| ||| |||||||||| ||| | ||||| ||||||||
Sbjct 154400 CCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACATCT 154459
Query 14207 CCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243
||| || || | ||| |||||||| || |||||
Sbjct 154460 GCCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496
>seq138
Length=3455650
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| |||||||||||||| |||||||| | || ||||||| ||||||||| |
Sbjct 2542790 CCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2542849
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || ||||||||||| ||||| || ||||| ||||| |
Sbjct 2542850 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAG 2542909
Query 13802 CTATTAGTCGTTCTCC 13817
| | | ||||||||
Sbjct 2542910 CCACAACACGTTCTCC 2542925
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/139 (75%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || | || | | || || || |||||| |
Sbjct 2541260 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATTCT 2541318
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 2541319 CTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2541378
Query 13431 CATAAAATCGAATGGATTT 13449
||| || || ||||| |||
Sbjct 2541379 CATGAAGTCAAATGGGTTT 2541397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478543507552440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |