Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq927 275 6e-69 seq138 123 2e-23 >seq927 Length=612318 Score = 275 bits (304), Expect = 6e-69 Identities = 628/937 (67%), Gaps = 11/937 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || || ||| | Sbjct 153566 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCTATTCT 153624 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 153625 CTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 153684 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 ||| || || ||||| ||| | | || | || | |||| || || | | | Sbjct 153685 CATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCCAGCTCCAGCATAAG 153744 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| || || | ||| ||||| | || ||||||| |||||||| || || || || Sbjct 153745 TCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGCTT 153804 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 || || | | | || | || || | |||||| ||||| | | || || Sbjct 153805 CACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCATTGACAATTATTTC 153864 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 || | | | | ||||| | | | || ||||| || || | || ||||| || Sbjct 153865 TTTGACTTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAAGTC 153924 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 ||| || | ||||||||||| |||||||||||||| |||||||| | || | ||||| Sbjct 153925 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACATCAG 153984 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 ||||| ||| || | ||| ||||| | || || || || |||||||| ||||| || || Sbjct 153985 TCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 154044 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 ||| ||||| |||| | ||||||||| | | || | ||||| ||||| Sbjct 154045 TGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCAA 154104 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910 ||||| || | || || || | | || |||||| || || || ||||| | | || Sbjct 154105 GGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAAGAGACACTC 154164 Query 13911 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 | | || || | | | ||| || || ||| | || | |||||||| ||||| ||| | Sbjct 154165 CCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTCAGAATGTTT 154224 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGA 14030 | |||| || || || || || ||||| ||||| | ||||||| || | || Sbjct 154225 G-TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTCTTG 154283 Query 14031 GTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC--C 14088 | ||| | || ||||||||||||| || || |||||||| || ||||| || || Sbjct 154284 GCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCAAG 154343 Query 14089 AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCT--AAAT 14146 || ||| | ||||| ||| ||| ||| || || || ||| | ||| | | Sbjct 154344 AACATGGGAT--ATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAGT--GCTGGAGGT 154399 Query 14147 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTA 14206 |||| || ||||| ||||| ||| |||||||||| ||| | ||||| |||||||| Sbjct 154400 CCTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACATCT 154459 Query 14207 CCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||| || || | ||| |||||||| || ||||| Sbjct 154460 GCCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496 >seq138 Length=3455650 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| |||||||||||||| |||||||| | || ||||||| ||||||||| | Sbjct 2542790 CCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2542849 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| ||||| || ||||| ||||| | Sbjct 2542850 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAG 2542909 Query 13802 CTATTAGTCGTTCTCC 13817 | | | |||||||| Sbjct 2542910 CCACAACACGTTCTCC 2542925 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || |||||| | Sbjct 2541260 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATTCT 2541318 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 2541319 CTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2541378 Query 13431 CATAAAATCGAATGGATTT 13449 ||| || || ||||| ||| Sbjct 2541379 CATGAAGTCAAATGGGTTT 2541397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478543507552440