Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq927 369 5e-97 seq636 138 2e-27 seq138 123 3e-23 seq1 96.9 5e-15 seq156 86.0 8e-12 >seq927 Length=612318 Score = 369 bits (408), Expect = 5e-97 Identities = 647/936 (69%), Gaps = 11/936 (1%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 |||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| ||| Sbjct 153564 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATTC 153623 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || || || || || | || || || || |||||||| ||||||| ||| ||||| | Sbjct 153624 TCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 153683 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894 ||||||| ||||| || || || | |||| || |||| |||| || || | Sbjct 153684 CCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCCAGCTCCAGCATAA 153743 Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954 ||| ||||| | ||||| || | ||||| | |||||||| || || || | Sbjct 153744 GTCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGCT 153803 Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014 | || || | ||| | || || || || ||||| || || || | || | | || Sbjct 153804 TCACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCAT-TGACA-ATTAT 153861 Query 42015 ATCTTACTGTTTCTTCACTC--GGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072 |||| ||||| | | ||| | | | ||||| ||||||| || || || Sbjct 153862 TTCTTTGACTTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAA 153921 Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132 || ||||| | |||||||||||| ||||| | |||||||||||| ||||| || | ||| Sbjct 153922 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACAT 153981 Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192 || || | || || ||||| ||||| || ||||| || |||||||||||||||||||| Sbjct 153982 CAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 154041 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTT 42249 ||||| ||||| || | || | |||||||| | | | |||| ||||| Sbjct 154042 CACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACG 154101 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 |||||||| |||||||| || ||||||||||| || || ||||| || |||||| | Sbjct 154102 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAAGAGACA 154161 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 | |||| || |||||||| ||| || || | | ||||||||||| || ||||| Sbjct 154162 CTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTCAGAATG 154221 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 || |||| ||||| || || || || |||||||| | ||| || |||| ||| | ||| Sbjct 154222 TTTG-TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTC 154280 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | ||| || || | || ||||| || ||||| || ||||| || ||||| || || Sbjct 154281 TTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGC 154340 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 | ||||| |||||||||| | || || || | | | ||| | | || || Sbjct 154341 AAGAACATGGGATATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAGTGCTGGAGGTC 154400 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609 || || | ||| ||||| || | |||||||| || || || || || |||||||| | Sbjct 154401 CTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACATCTG 154460 Query 42610 CCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 ||| |||||||| |||| || || || | ||||| Sbjct 154461 CCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496 >seq636 Length=1077480 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| |||||||||||||| || || |||||||| ||||| | Sbjct 918553 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATATGGTTCAATG 918494 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 918493 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 918434 Query 71263 CTATTTCTAAGACCAT 71278 ||||| || | ||||| Sbjct 918433 CTATTCCTTATACCAT 918418 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 899269 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 899210 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| ||| Sbjct 899209 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGT 899150 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 899149 TCCAGGTAAATAGC 899136 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| |||||||| ||||| | || || || || || || || || |||| Sbjct 886353 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGAA 886294 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 886293 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 886234 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 886233 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 886188 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || || ||||| || | | | ||| || ||||| || || || || ||||||||| Sbjct 906287 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 906228 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||||||||| || || | |||||| | || || || || || ||||| ||||| Sbjct 906227 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 906168 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | | |||||||| || ||||| | ||||| || ||||| || || || | || | Sbjct 906167 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 906108 Query 71563 TTATTAGA 71570 ||||| || Sbjct 906107 TTATTTGA 906100 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||| | ||| | || | || || ||||| || | || |||||||| || |||||| Sbjct 891308 CTAGAAAGTTGTGGGCGGTTTGTACCAGCATTGAAGAGAGTGGGAGAAGCATGGGTAAAC 891249 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || | ||||| || || ||||| || |||||||| | || ||||| || || || Sbjct 891248 CACCTCTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATC 891189 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || | || | ||| |||||||| |||||||||||| Sbjct 891188 CCCACAGATACCCTCATCAACATATGTTGAGGTCTTTCA 891150 >seq138 Length=3455650 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | |||||||||||| ||||| || ||||| || || || || | Sbjct 2542790 CCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2542849 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 2542850 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAG 2542909 Query 42207 C 42207 | Sbjct 2542910 C 2542910 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||| || || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 2544461 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 2544520 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || ||||| || | ||| || |||| ||| | |||| Sbjct 2544521 AATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTAATCTGAATTTCT 2544566 >seq1 Length=12387654 Score = 96.9 bits (106), Expect = 5e-15 Identities = 177/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 39855 |||||| || ||||| ||| ||| | ||| | ||| ||||| | || ||||| Sbjct 7595573 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTC--ATCTAAAACTTAGACTTCC 7595516 Query 39856 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 39915 || | ||| |||||| | || |||| | | || ||||| || |||| || ||| | || Sbjct 7595515 TCTATTTCAGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 7595456 Query 39916 ACATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 39975 || | || | ||| ||| ||||| || | || || || ||||| || |||||| Sbjct 7595455 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAATATTTCCTCTGTAATCT 7595396 Query 39976 TCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGA 40032 || ||||| ||||| ||||||||||||| | |||| | || ||||| | ||| Sbjct 7595395 TCATCTATGACACCAGCTCCTATATCAATGAAATATTTTGCAGCCAAGCCAGAACATGGA 7595336 Query 40033 GCTATTCTACCATAGCA 40049 ||| ||| |||||||| Sbjct 7595335 ACTACTCTTCCATAGCA 7595319 >seq156 Length=3029033 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 39798 TCCAGTTGATCCAAATCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 39855 |||||| || ||||| ||| ||||| ||| | ||| ||||| | ||| ||||| Sbjct 18943 TCCAGTGGAACCAAAACCTCCTGAGCCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 19000 Query 39856 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 39915 || | |||||||||| | || ||| | | || ||||| || |||| || ||| | || Sbjct 19001 TCTATTTCTGGATAAAA-ATCTGTTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 19059 Query 39916 ACATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 39975 || | || | ||| ||| ||||| || | || || || ||||| ||||||||| Sbjct 19060 ACTTCAAACTTTTCTTTGCCAA-ATTAAACAGTACAACACCAATATTTCCTCTATAATCT 19118 Query 39976 TCGTCTATTACACCGCCTCCTATATCAAT 40004 || ||||| ||||| |||||| ||| || Sbjct 19119 TCATCTATGACACCAACTCCTACATCTAT 19147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671075685063960