Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq5788 138 4e-28 >seq5788 Length=1233 Score = 138 bits (152), Expect = 4e-28 Identities = 299/444 (67%), Gaps = 15/444 (3%) Strand=Plus/Plus Query 53030 CGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGC 53089 || |||||| || || || || | |||||||||||| | || || || ||||| Sbjct 267 CGCCAGTTCCATGCCGACCGTCCAAATCAGCTGTGGGTGTCGGACTTCACGTACGTGTCG 326 Query 53090 ACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATTGTG 53149 || |||||||||| | |||||||| ||| | ||||| |||||||| | || || Sbjct 327 ACCTGGCAGGGCTGGCTGTATGTGGCCTTCGTGATTGACGTGTTTGCGCGGCGGATCGTT 386 Query 53150 GGGTGGCGGGTCTCATCGTCCATGGAGA-CGACATTCGTGCTGGATGCACTGGAGCAGGC 53208 || ||||| ||| | |||| ||| |||| |||||||||||||| |||||||| || Sbjct 387 GGCTGGCGAGTCAGTACCAGCATGAAGACCGAC-TTCGTGCTGGATGCTCTGGAGCAAGC 445 Query 53209 GTTATGGGCCCGTCGACCGTCCGGCACGG---------TCCATCACAGTGATAAAGGTTC 53259 | | ||||| | ||| || ||| |||||||||| || || Sbjct 446 CCTGTATGCCCGCCAGCCGCATTGCGCGGGTGGTCTGATCCATCACAGCGACCGTGGCAG 505 Query 53260 TCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTACTG--GCATCA 53317 |||||||| ||| | |||||| ||||||| || ||||| || || | || Sbjct 506 CCAGTATGTCTCGATTCGCTACACCGAGCGGCTGGCAGAGGCCGG--TATTGAACCCTCG 563 Query 53318 ACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTAC 53377 || || | |||||| || |||||||| |||| |||| ||||| || || ||| Sbjct 564 GTTGGCAGCAAGGGCGACAGCTACGACAACGCCTTGGCTGAGACTATCAACGGGCTGTAC 623 Query 53378 AAAGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACA 53437 || || ||| | ||||||||| | ||||| ||||| | || || || |||| || Sbjct 624 AAGGCTGAGCTGATACACCGTCAATCATGGAAGAACCGCGAAGCTGTTGAGATGGCGACC 683 Query 53438 CTCACGTGGGTGGACTGGTATAAC 53461 | | |||||| ||||||| ||| Sbjct 684 TTGAGATGGGTGCACTGGTACAAC 707 Score = 125 bits (138), Expect = 3e-24 Identities = 295/443 (67%), Gaps = 13/443 (3%) Strand=Plus/Plus Query 50190 CGTCAGTTCGTGGCAGAACGTCCAGACCAGTTGTGGGTGGCTGATTTTACCTGGGTAAGC 50249 || |||||| || || |||||| | ||| |||||||| | || || || | || Sbjct 267 CGCCAGTTCCATGCCGACCGTCCAAATCAGCTGTGGGTGTCGGACTTCACGTACGTGTCG 326 Query 50250 ACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGATGTGTTCGCCGGATACATCGTG 50309 || |||||||||| | |||||||| ||| | ||||| ||||| || | ||||| Sbjct 327 ACCTGGCAGGGCTGGCTGTATGTGGCCTTCGTGATTGACGTGTTTGCGCGGCGGATCGTT 386 Query 50310 GGATGGCAGGTCTCATCATCCATGGAAACAACATTCGTGCTGGATGCACTGGAGCAGGCG 50369 || |||| ||| | |||| | || |||||||||||||| |||||||| || Sbjct 387 GGCTGGCGAGTCAGTACCAGCATGAAGACCGACTTCGTGCTGGATGCTCTGGAGCAAGCC 446 Query 50370 TTGTGGGCCCGTCGGCCG---TCC------GGCACAATCCATCACAGTGATAAAGGTTCT 50420 ||| ||||| | |||| | | || ||||||||||| || || Sbjct 447 CTGTATGCCCGCCAGCCGCATTGCGCGGGTGGTCTGATCCATCACAGCGACCGTGGCAGC 506 Query 50421 CAGTATGTATCGCTGGCCTACACGCAGCGGCTTAAGGAAGCCGGATTACTG--GCATCAA 50478 |||||||| ||| | |||||| ||||||| || ||||| || || | || Sbjct 507 CAGTATGTCTCGATTCGCTACACCGAGCGGCTGGCAGAGGCCGG--TATTGAACCCTCGG 564 Query 50479 CAGGGAGTACTGGCGACTCGTATGACAACGCGATGGCTGAGAGCATCAATGGTCTTTACA 50538 || || | |||||| || |||||||| ||||||||| ||||| || || |||| Sbjct 565 TTGGCAGCAAGGGCGACAGCTACGACAACGCCTTGGCTGAGACTATCAACGGGCTGTACA 624 Query 50539 AAGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGGACAGAAGTGGAACTGGCCACAC 50598 | || ||| | ||||||||| | ||||| ||||| || || || |||| || Sbjct 625 AGGCTGAGCTGATACACCGTCAATCATGGAAGAACCGCGAAGCTGTTGAGATGGCGACCT 684 Query 50599 TAACGTGGGTGGACTGGTATAAC 50621 | | |||||| ||||||| ||| Sbjct 685 TGAGATGGGTGCACTGGTACAAC 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185237744587384