Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_004813.1
Length=57930
Score E
Sequences producing significant alignments: (Bits) Value
seq5788 138 4e-28
>seq5788
Length=1233
Score = 138 bits (152), Expect = 4e-28
Identities = 299/444 (67%), Gaps = 15/444 (3%)
Strand=Plus/Plus
Query 53030 CGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGC 53089
|| |||||| || || || || | |||||||||||| | || || || |||||
Sbjct 267 CGCCAGTTCCATGCCGACCGTCCAAATCAGCTGTGGGTGTCGGACTTCACGTACGTGTCG 326
Query 53090 ACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATTGTG 53149
|| |||||||||| | |||||||| ||| | ||||| |||||||| | || ||
Sbjct 327 ACCTGGCAGGGCTGGCTGTATGTGGCCTTCGTGATTGACGTGTTTGCGCGGCGGATCGTT 386
Query 53150 GGGTGGCGGGTCTCATCGTCCATGGAGA-CGACATTCGTGCTGGATGCACTGGAGCAGGC 53208
|| ||||| ||| | |||| ||| |||| |||||||||||||| |||||||| ||
Sbjct 387 GGCTGGCGAGTCAGTACCAGCATGAAGACCGAC-TTCGTGCTGGATGCTCTGGAGCAAGC 445
Query 53209 GTTATGGGCCCGTCGACCGTCCGGCACGG---------TCCATCACAGTGATAAAGGTTC 53259
| | ||||| | ||| || ||| |||||||||| || ||
Sbjct 446 CCTGTATGCCCGCCAGCCGCATTGCGCGGGTGGTCTGATCCATCACAGCGACCGTGGCAG 505
Query 53260 TCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTACTG--GCATCA 53317
|||||||| ||| | |||||| ||||||| || ||||| || || | ||
Sbjct 506 CCAGTATGTCTCGATTCGCTACACCGAGCGGCTGGCAGAGGCCGG--TATTGAACCCTCG 563
Query 53318 ACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTAC 53377
|| || | |||||| || |||||||| |||| |||| ||||| || || |||
Sbjct 564 GTTGGCAGCAAGGGCGACAGCTACGACAACGCCTTGGCTGAGACTATCAACGGGCTGTAC 623
Query 53378 AAAGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACA 53437
|| || ||| | ||||||||| | ||||| ||||| | || || || |||| ||
Sbjct 624 AAGGCTGAGCTGATACACCGTCAATCATGGAAGAACCGCGAAGCTGTTGAGATGGCGACC 683
Query 53438 CTCACGTGGGTGGACTGGTATAAC 53461
| | |||||| ||||||| |||
Sbjct 684 TTGAGATGGGTGCACTGGTACAAC 707
Score = 125 bits (138), Expect = 3e-24
Identities = 295/443 (67%), Gaps = 13/443 (3%)
Strand=Plus/Plus
Query 50190 CGTCAGTTCGTGGCAGAACGTCCAGACCAGTTGTGGGTGGCTGATTTTACCTGGGTAAGC 50249
|| |||||| || || |||||| | ||| |||||||| | || || || | ||
Sbjct 267 CGCCAGTTCCATGCCGACCGTCCAAATCAGCTGTGGGTGTCGGACTTCACGTACGTGTCG 326
Query 50250 ACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGATGTGTTCGCCGGATACATCGTG 50309
|| |||||||||| | |||||||| ||| | ||||| ||||| || | |||||
Sbjct 327 ACCTGGCAGGGCTGGCTGTATGTGGCCTTCGTGATTGACGTGTTTGCGCGGCGGATCGTT 386
Query 50310 GGATGGCAGGTCTCATCATCCATGGAAACAACATTCGTGCTGGATGCACTGGAGCAGGCG 50369
|| |||| ||| | |||| | || |||||||||||||| |||||||| ||
Sbjct 387 GGCTGGCGAGTCAGTACCAGCATGAAGACCGACTTCGTGCTGGATGCTCTGGAGCAAGCC 446
Query 50370 TTGTGGGCCCGTCGGCCG---TCC------GGCACAATCCATCACAGTGATAAAGGTTCT 50420
||| ||||| | |||| | | || ||||||||||| || ||
Sbjct 447 CTGTATGCCCGCCAGCCGCATTGCGCGGGTGGTCTGATCCATCACAGCGACCGTGGCAGC 506
Query 50421 CAGTATGTATCGCTGGCCTACACGCAGCGGCTTAAGGAAGCCGGATTACTG--GCATCAA 50478
|||||||| ||| | |||||| ||||||| || ||||| || || | ||
Sbjct 507 CAGTATGTCTCGATTCGCTACACCGAGCGGCTGGCAGAGGCCGG--TATTGAACCCTCGG 564
Query 50479 CAGGGAGTACTGGCGACTCGTATGACAACGCGATGGCTGAGAGCATCAATGGTCTTTACA 50538
|| || | |||||| || |||||||| ||||||||| ||||| || || ||||
Sbjct 565 TTGGCAGCAAGGGCGACAGCTACGACAACGCCTTGGCTGAGACTATCAACGGGCTGTACA 624
Query 50539 AAGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGGACAGAAGTGGAACTGGCCACAC 50598
| || ||| | ||||||||| | ||||| ||||| || || || |||| ||
Sbjct 625 AGGCTGAGCTGATACACCGTCAATCATGGAAGAACCGCGAAGCTGTTGAGATGGCGACCT 684
Query 50599 TAACGTGGGTGGACTGGTATAAC 50621
| | |||||| ||||||| |||
Sbjct 685 TGAGATGGGTGCACTGGTACAAC 707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 185237744587384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |