Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq5788 143 1e-29 >seq5788 Length=1233 Score = 143 bits (158), Expect = 1e-29 Identities = 300/444 (68%), Gaps = 15/444 (3%) Strand=Plus/Minus Query 56375 GTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAGCT 56434 ||| ||||||| |||||| | | || |||| || || || | ||||| ||||| Sbjct 707 GTTGTACCAGTGCACCCATCTCAAGGTCGCCATCTCAACAGCTTCGCGGTTCTTCCATGA 648 Query 56435 CTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTC 56494 | ||||||||| | ||| || ||||| || || ||||| ||||||||| |||||||| Sbjct 647 TTGACGGTGTATCAGCTCAGCCTTGTACAGCCCGTTGATAGTCTCAGCCAAGGCGTTGTC 588 Query 56495 ATACGAGTCGCCTGTACTCCCTGTTGATGC--CAGTAATCCGGCTTCTTTTAGTCGCTCC 56552 || |||||| | || || || | || || ||||| ||| || ||||| Sbjct 587 GTAGCTGTCGCCCTTGCTGCCAACCGAGGGTTCAATA--CCGGCCTCTGCCAGCCGCTCG 530 Query 56553 GTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATG---------GTG 56603 || ||| | || |||||||| ||| |||||||||||||| | | Sbjct 529 GTGTAGCGAATCGAGACATACTGGCTGCCACGGTCGCTGTGATGGATCAGACCACCCGCG 470 Query 56604 CCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT-TC 56662 | | ||| | ||||| ||| || |||||||| |||||||||||||| |||| | | Sbjct 469 CAATGCGGCTGGCGGGCATACAGGGCTTGCTCCAGAGCATCCAGCACGAA-GTCGGTCTT 411 Query 56663 CATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAAACGC 56722 ||| | ||| ||||| || ||||| | |||||||| ||||| | || || Sbjct 410 CATGCTGGTACTGACTCGCCAGCCAACGATCCGCCGCGCAAACACGTCAATCACGAAGGC 351 Query 56723 CACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTC 56782 |||||| | |||||||||| || ||||| || || || | |||||||||||| | Sbjct 350 CACATACAGCCAGCCCTGCCAGGTCGACACGTACGTGAAGTCCGACACCCACAGCTGATT 291 Query 56783 AGGTCGTTCTGCCACGAACTGACG 56806 || || || || |||||| || Sbjct 290 TGGACGGTCGGCATGGAACTGGCG 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200515896377577