Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1701 132 8e-27
seq989 129 9e-26
>seq1701
Length=88833
Score = 132 bits (146), Expect = 8e-27
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || | ||||||||||| || ||||||||||| || ||
Sbjct 88014 CGCCAAGCGCCACCGCAAGGTGCTGAGGGATAACATCCAGGGCATCACCAAGCCCGCGAT 88073
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || || ||||| ||||| || |||||||| |||| || | |||| || ||||
Sbjct 88074 CCGGCGCCTCGCTCGGCGTGGCGGGGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 88133
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| ||||| | ||||| ||| ||| |||| || || || ||| |||||
Sbjct 88134 CCGCGGTGTCCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 88193
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644
|||||| || || ||||| ||||| |||||||
Sbjct 88194 GCACGCCAAGCGCAAGACGGTCACTGCCATGGA 88226
Score = 123 bits (136), Expect = 4e-24
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || | ||||||||||| || || || ||||| || ||
Sbjct 75013 CGCCAAGCGCCACCGCAAGGTGCTGAGGGATAACATCCAGGGCATTACTAAGCCCGCGAT 75072
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || || ||||| ||||| || |||||||| |||| || | |||| || ||||
Sbjct 75073 CCGGCGCCTCGCTCGGCGTGGCGGGGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 75132
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||||| ||| ||| |||| || || || ||| |||||
Sbjct 75133 CCGCGGGGTCCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 75192
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644
|||||| || || ||||| |||||| |||||||
Sbjct 75193 GCACGCCAAGCGCAAGACGGTCACCGCCATGGA 75225
>seq989
Length=699001
Score = 129 bits (142), Expect = 9e-26
Identities = 185/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || ||||||||||| || ||||||||||| |||||
Sbjct 242897 CGCCAAGCGCCACCGCAAGGTGCTGCGTGATAACATCCAGGGCATCACCAAGCCCGCTAT 242838
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| ||||||| | |||| || ||||
Sbjct 242837 CCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCTGGGCTCATCTACGAGGAGAC 242778
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| | | ||| |||| || || || ||| || ||
Sbjct 242777 CCGCGGGGTGCTCAAGGTGTTCCTGGAAAACGTGATCCGGGACGCCGTCACCTACACGGA 242718
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || || || ||||| ||||| ||||||| | || ||||| | || || || ||
Sbjct 242717 GCATGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTATGCGCTCAAGCGCCAGGG 242658
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || ||||| ||
Sbjct 242657 CCGCACCCTCTACGGTTTCGG 242637
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| ||||||| || || || |||||||| || ||||||||||| || ||
Sbjct 354422 CGCCAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 354363
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||| || ||||| || |||||||| |||| || | |||| || ||||
Sbjct 354362 CCGGCGCTTGGCCCGGCGTGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 354303
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 354302 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 354243
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 354242 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 354183
Query 16672 CCG 16674
|||
Sbjct 354182 CCG 354180
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 518601 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 518660
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 518661 CCGGCGCCTGGCCCGACGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 518720
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 518721 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 518780
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| ||||| ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 518781 GCACGCCAAACGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 518840
Query 16672 CCG 16674
|||
Sbjct 518841 CCG 518843
Score = 123 bits (136), Expect = 4e-24
Identities = 184/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 609274 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 609215
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || ||||| || |||||||| |||| || | |||| || ||||
Sbjct 609214 CCGGCGCCTGGCCCGGCGTGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 609155
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 609154 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 609095
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 609094 GCACGCCAAGCGGAAGACGGTCACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 609035
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || ||||| ||
Sbjct 609034 CCGCACCCTCTACGGTTTCGG 609014
Score = 118 bits (130), Expect = 2e-22
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 522855 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 522796
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 522795 CCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 522736
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 522735 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 522676
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 522675 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 522616
Query 16672 CCG 16674
|||
Sbjct 522615 CCG 522613
Score = 118 bits (130), Expect = 2e-22
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 646997 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 647056
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 647057 CCGGCGCCTGGCCCGACGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 647116
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 647117 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 647176
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 647177 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 647236
Query 16672 CCG 16674
|||
Sbjct 647237 CCG 647239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79068277781703
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