Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq927 390 1e-103 seq636 134 2e-26 seq138 120 4e-22 seq861 107 2e-18 seq1 96.9 4e-15 seq156 82.4 1e-10 >seq927 Length=612318 Score = 390 bits (432), Expect = 1e-103 Identities = 651/936 (70%), Gaps = 11/936 (1%) Strand=Plus/Plus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 33013 |||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| ||| Sbjct 153564 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATTC 153623 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | || || || || || | || || || || ||||| || ||||||| ||| ||||| | Sbjct 153624 TCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 153683 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 ||||||| ||||| || || || | |||| || |||| |||| || || | Sbjct 153684 CCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCCAGCTCCAGCATAA 153743 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 ||| || || || ||||| || | ||||| | |||||||| || || || | Sbjct 153744 GTCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGCT 153803 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 33253 | || || | ||| | || || || || ||||| || ||| |||| || || Sbjct 153804 TCACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCATTGACAATTATTT 153863 Query 33254 ATCTAACGGTTTCTTCACTC--GGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 | | || ||||| | | ||| || | | ||||| ||||||| || || || Sbjct 153864 CTTTGAC--TTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAA 153921 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 || ||||| | |||||| ||||| ||||| |||||||||||||| ||||| || | ||| Sbjct 153922 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACAT 153981 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || || | || || ||||| ||||| || || || || |||||||||||||||||||| Sbjct 153982 CAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 154041 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTT 33488 ||||| ||||| || | || | |||||||| | | | |||| ||||| Sbjct 154042 CACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACG 154101 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 |||||||| |||||||| || ||||||||||| || || ||||| || |||||| | Sbjct 154102 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAAGAGACA 154161 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 | |||| || |||||||| ||| || || | | ||||||||||| || ||||| Sbjct 154162 CTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTCAGAATG 154221 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 || |||| ||||| || || || || |||||||| | || || |||||||| | ||| Sbjct 154222 TTTG-TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTC 154280 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | | ||| || ||| |||| |||||||| ||||| || ||||| || ||||| || || Sbjct 154281 TTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGC 154340 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 | ||||| |||||||||| | || || || | || | ||| | | || || Sbjct 154341 AAGAACATGGGATATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAGTGCTGGAGGTC 154400 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 || || | ||| ||||| || |||||||||| || ||||| || || |||||||| | Sbjct 154401 CTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACATCTG 154460 Query 33849 CCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||| || |||| |||| ||| || || | ||||| Sbjct 154461 CCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496 >seq636 Length=1077480 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 918553 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATATGGTTCAATG 918494 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 918493 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 918434 Query 62457 CTATTTCTAAGACCGTA 62473 ||||| || | ||| || Sbjct 918433 CTATTCCTTATACCATA 918417 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 899273 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 899214 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 899213 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 899154 Query 63332 CGGTTCCAAGTATATGGC 63349 ||||||| ||| || || Sbjct 899153 AGGTTCCAGGTAAATAGC 899136 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| |||||||| ||||| | || || || || || || || || |||| Sbjct 886353 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGAA 886294 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 886293 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 886234 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 886233 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 886188 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||| | ||| | || | || || ||||| || | || |||||||| || |||||| Sbjct 891308 CTAGAAAGTTGTGGGCGGTTTGTACCAGCATTGAAGAGAGTGGGAGAAGCATGGGTAAAC 891249 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 || | |||||||| || ||||| || |||||||| | || ||||| || ||||| Sbjct 891248 CACCTCTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATC 891189 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 || || | || | ||| ||||| || |||||||||||| Sbjct 891188 CCCACAGATACCCTCATCAACATATGTTGAGGTCTTTCA 891150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || || ||||| || | || || || || ||||| || || || || || || ||| Sbjct 906287 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 906228 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 ||||||||||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 906227 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 906168 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 906167 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 906108 Query 62757 TTATTAGA 62764 ||||| || Sbjct 906107 TTATTTGA 906100 >seq138 Length=3455650 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| |||||||||||||| ||||| || ||||| || || || || | Sbjct 2542790 CCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2542849 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || ||||||||||||||||| ||||| ||||| | Sbjct 2542850 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAG 2542909 Query 33446 C 33446 | Sbjct 2542910 C 2542910 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| |||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 2544461 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 2544520 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || ||||| || | || || |||||||| | |||| | ||| || || Sbjct 2544521 AATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTAATCTGAATTTCTTGGCTAAACCGCTC 2544580 Query 33684 CGCC 33687 | || Sbjct 2544581 CACC 2544584 >seq861 Length=819057 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | || || Sbjct 774702 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 774643 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| | ||||||||| ||||||||||| Sbjct 774642 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAACTCCTTCTACAGCAGCAAAGGC 774584 >seq1 Length=12387654 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | || ||||| Sbjct 7595573 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTC--ATCTAAAACTTAGACTTCC 7595516 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | ||| |||||| | || |||| | | || ||||| || |||| || || | || Sbjct 7595515 TCTATTTCAGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 7595456 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| ||||| || | || || || ||||| || |||||| Sbjct 7595455 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAATATTTCCTCTGTAATCT 7595396 Query 31225 TCGTCTATTACACCGCCTCCTATATCAATG---CCTTTTAGGGACAGACCAGACCTAGGA 31281 || ||||| ||||| |||||||||||||| |||| | || ||||| | ||| Sbjct 7595395 TCATCTATGACACCAGCTCCTATATCAATGAAATATTTTGCAGCCAAGCCAGAACATGGA 7595336 Query 31282 GCTATTCTACCATAGCA 31298 ||| ||| |||||||| Sbjct 7595335 ACTACTCTTCCATAGCA 7595319 >seq156 Length=3029033 Score = 82.4 bits (90), Expect = 1e-10 Identities = 147/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 18943 TCCAGTGGAACCAAAACCTCCTGAGCCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 19000 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||||||| | || ||| | | || ||||| || |||| || || | || Sbjct 19001 TCTATTTCTGGATAAAA-ATCTGTTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 19059 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| ||||| || | || || || ||||| ||||||||| Sbjct 19060 ACTTCAAACTTTTCTTTGCCAA-ATTAAACAGTACAACACCAATATTTCCTCTATAATCT 19118 Query 31225 TCGTCTATTACACCGCCTCCTATATCAATG 31254 || ||||| ||||| |||||| ||| ||| Sbjct 19119 TCATCTATGACACCAACTCCTACATCTATG 19148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622888245834360