Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq636 95.1 3e-14 seq927 86.0 2e-11 >seq636 Length=1077480 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 900470 GCCCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCATACATG 900529 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || ||||| || |||||||||| |||| || || || | Sbjct 900530 CTCTACAAAGATTCCTGTAACCGGAAAAGCAACCAGCAGAACCTGGGAACGATCAAATGC 900589 Query 364231 AGCAACCTATGTACCGAGAT 364250 |||||||| || || || || Sbjct 900590 AGCAACCTGTGCACAGAAAT 900609 Score = 84.2 bits (92), Expect = 6e-11 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| |||| | ||||||| || ||||||| |||| || || ||||||||||| Sbjct 921613 CAGAGCATACCAGAAATTCCAGATGACCTGAAGCAACTTTATAAGACTGTATGGGAAATC 921672 Query 365011 TCCATGCGAAC---TCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGC 365067 || | ||| ||||| | ||||| || || | |||||||| || ||| ||| Sbjct 921673 TCTCAGAAAACCATTCTCA---AGATGGCAGCTGAGAGAGGTGCTTTCATTGATCAAAGC 921729 Query 365068 CAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTC 365127 ||||| || ||| | ||| || |||| | || | ||| || || ||||| ||| Sbjct 921730 CAGTCTTTGAACATCCACATTGCTGAGCCTAACTATGGCAAACTCACTAGTATGCACTTC 921789 Query 365128 TACGGGTGGAA 365138 ||||| ||||| Sbjct 921790 TACGGCTGGAA 921800 >seq927 Length=612318 Score = 86.0 bits (94), Expect = 2e-11 Identities = 332/519 (64%), Gaps = 6/519 (1%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || ||||| | |||| || | | | | ||| Sbjct 154125 AAGAAGAAGGCAGATTGGGCCTTGCGTTGGATTGGGGACAAAGAGGCTACCTATGGAGAA 154066 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| || | || ||||| | || ||||| || ||||||||||| | ||| | || Sbjct 154065 CGTGTTGTAGCTTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATA 154006 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||| | | | | ||| | || || || ||||| || || | |||||| Sbjct 154005 TTCTGGCTCAAGAAATGAGGACTGATGTCTGGCCTCACATTTTCCAACGAACTTATTAGC 153946 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 ||||||||||| | || || ||||| || || | | || || || | || || Sbjct 153945 AGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGT-TC--AAACACCTGATACAC 153889 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 |||| | | | | | || || || ||| ||||| || | |||| Sbjct 153888 AAACCTTCGGAGCAGAAAGTCAAAGAAATAATTGTCAATGCTGTAAGGATAGAACAGGAG 153829 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 || | ||||| || || || | |||||||| || ||| | | ||||| Sbjct 153828 TTCCTCACAGAGGCATTGCCGGTGAAGCTCATTGGGATGAATTGCACTTTAATGAAGCAG 153769 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 | ||| ||||||| ||||| | || | | || |||| | ||| || | Sbjct 153768 TGCATTGAATTTGTGGCAGACAGACTTATGCTGGAGCTGGGTTTTAGCAAGATTTTCAGA 153709 Query 22852 GTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTC 22911 || | || |||||||| | ||||| ||||||||| ||||| ||||| || ||||| Sbjct 153708 GTAGAAAACCCATTTGACTTCATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 153649 Query 22912 GAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || ||||| || || || || | | ||| || ||| Sbjct 153648 GAGAAGAGAGTAGGAGAGTATCAGAGAATAGGAGTGATG 153610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303227170220522