Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq927 390 1e-103 seq636 134 2e-26 seq138 114 2e-20 seq1 91.5 2e-13 >seq927 Length=612318 Score = 390 bits (432), Expect = 1e-103 Identities = 652/936 (70%), Gaps = 11/936 (1%) Strand=Plus/Plus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 32370 |||| |||||| |||| | | |||| ||| ||| | || ||||| ||||| ||| Sbjct 153564 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATTC 153623 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | || || || || || | || || || || ||||| || ||||| | ||| ||||| | Sbjct 153624 TCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 153683 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 32490 ||||||| || ||||| || || | |||| || |||| |||| || || | Sbjct 153684 CCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGCTAAAACCCAGCTCCAGCATAA 153743 Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550 ||| ||||| |||||||| || | ||||| | |||||||| || || || | Sbjct 153744 GTCTGTCTGCCACAAATTCAATGCACTGCTTCATTAAAGTGCAATTCATCCCAATGAGCT 153803 Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610 | || || | ||| | || || || || ||||| || || || | || | | || Sbjct 153804 TCACCGGCAATGCCTCTGTGAGGAACTCCTGTTCTATCCTTACAGCAT-TGACA-ATTAT 153861 Query 32611 ATCTTACTGTTTCTTCACTC--GGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 32668 |||| ||||| | | ||| | | | ||||| ||||||| || || || Sbjct 153862 TTCTTTGACTTTCTGCTCCGAAGGTTTGTGTATCAGGTGTTTGAACATCAGGCAGGCAAA 153921 Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728 || ||||||| |||||| ||||| ||||| | |||||||||||| ||||| || | ||| Sbjct 153922 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGACAT 153981 Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788 || || | || || ||||| ||||| || ||||| || ||||||||||| |||||||| Sbjct 153982 CAGTCCTCATTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 154041 Query 32789 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTT 32845 ||||| ||||| || | || | |||||||| | | | |||| ||||| Sbjct 154042 CACTGCGGCAAAAGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACG 154101 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 |||||||| |||||||| || ||||||||||||||||| || || || |||||| | Sbjct 154102 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTCTCAATGGCGTTGAAGAGACA 154161 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 | |||| || |||||||| ||| || ||| | | ||||||||||| || ||||| Sbjct 154162 CTCCCTTTCCTTGGAATCTTTAATATACGTGTCATTGAGGAGACTATACATCTCAGAATG 154221 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 || |||| ||||| ||||| || || ||||| || | || || |||||||| | ||| Sbjct 154222 TTTG-TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAATTTC 154280 Query 33026 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085 | | ||| || || | || |||||||| ||||| || ||||| || ||||| || || Sbjct 154281 TTGGCTAAACCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGC 154340 Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33145 | ||||| |||||||||| | || || || | || | ||| | | || || Sbjct 154341 AAGAACATGGGATATAAAATATCTCTCATCAGGCTTCAGGGCTTCCCAGTGCTGGAGGTC 154400 Query 33146 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 33205 || || | ||||||||| || |||||||||| || ||||| || || |||||||| | Sbjct 154401 CTTGGAGAGATCCACTTCCTCAGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACATCTG 154460 Query 33206 CCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||| || ||||| |||| || ||||| | ||||| Sbjct 154461 CCAAATATCATGGTATTCGATAGGAAAGACGACAAA 154496 >seq636 Length=1077480 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 918553 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATATGGTTCAATG 918494 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 918493 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 918434 Query 62312 CTATTTCTAAGACCGTA 62328 ||||| || | ||| || Sbjct 918433 CTATTCCTTATACCATA 918417 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || || |||| Sbjct 886353 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGAA 886294 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 886293 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 886234 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 886233 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 886188 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 899273 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 899214 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 899213 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 899154 Query 63187 CGGTTCCAAGTATATGGC 63204 ||||||| ||| || || Sbjct 899153 AGGTTCCAGGTAAATAGC 899136 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| | ||| | || | || || ||||| || | || |||||||| || |||||| Sbjct 891308 CTAGAAAGTTGTGGGCGGTTTGTACCAGCATTGAAGAGAGTGGGAGAAGCATGGGTAAAC 891249 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || | |||||||| || ||||| || |||||||| | || ||||| || ||||| Sbjct 891248 CACCTCTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATC 891189 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| || |||||||||||| Sbjct 891188 CCCACAGATACCCTCATCAACATATGTTGAGGTCTTTCA 891150 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 || || || ||||| || | || || || || ||||| || || || || || || ||| Sbjct 906287 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 906228 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 ||||||||||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 906227 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 906168 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 906167 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 906108 Query 62612 TTATTAGA 62619 ||||| || Sbjct 906107 TTATTTGA 906100 >seq138 Length=3455650 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | |||||||||||| ||||| || ||||| || || || || | Sbjct 2542790 CCTCATCTCTGCTAATAAGTTCGTTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 2542849 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || || |||||||| |||||||| ||||| ||||| | Sbjct 2542850 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCCACTGCGGCAAAAG 2542909 Query 32803 C 32803 | Sbjct 2542910 C 2542910 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| ||| || ||||| | ||||||||||| || ||||| |||||||| ||||| Sbjct 2544461 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 2544520 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || |||||||| | || || |||||||| | |||| Sbjct 2544521 AATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTAATCTGAATTTCT 2544566 >seq1 Length=12387654 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 30404 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCT 30461 ||| || || ||||| ||| ||| | ||| | ||| ||||| | || ||||| Sbjct 7595573 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTC--ATCTAAAACTTAGACTTCC 7595516 Query 30462 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 30521 | | ||| |||||| | || |||| | | || ||||| || |||| || ||| | || Sbjct 7595515 TCTATTTCAGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 7595456 Query 30522 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 30581 || | || | ||| ||| ||||| || | || || |||||||| || |||||| Sbjct 7595455 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAATATTTCCTCTGTAATCT 7595396 Query 30582 TCGTCTATTACACCGCCTCCTATATCAATG---CCTTTTAGGGACAGACCAGACCTAGGA 30638 || ||||| ||||| |||||||||||||| |||| | || ||||| | ||| Sbjct 7595395 TCATCTATGACACCAGCTCCTATATCAATGAAATATTTTGCAGCCAAGCCAGAACATGGA 7595336 Query 30639 GCTATTCTACCATAGCA 30655 ||| ||| |||||||| Sbjct 7595335 ACTACTCTTCCATAGCA 7595319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633572034651600