Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5307 123 2e-23 seq717 109 5e-19 seq298 98.7 9e-16 seq56 87.8 2e-12 seq45 87.8 2e-12 seq210 86.0 5e-12 seq73 82.4 7e-11 >seq5307 Length=1324 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||||||| | || || ||| | | Sbjct 729 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 788 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || |||| |||| || ||||| || || || ||||||||| Sbjct 789 GACACTATTGAG--AATGCCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 845 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | |||||||| |||||||| | || |||| |||||| | || || Sbjct 846 CAGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTAT 905 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| ||||| ||||| || ||||| Sbjct 906 AATATCCAGAAAGAGTCCACTCTACACTTGGTGCT 940 >seq717 Length=839118 Score = 109 bits (120), Expect = 5e-19 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||||||| | || || ||| | | Sbjct 563669 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 563610 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || |||| |||| || ||||| || || || ||||||||| Sbjct 563609 GACACTATTGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 563553 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||| | |||||||| |||||||| | || |||| |||||| | || | Sbjct 563552 CAGCAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTGT 563493 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| ||||| || || || ||||| Sbjct 563492 AATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 563458 >seq298 Length=2265018 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/215 (71%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| | ||||| ||||| |||| || || |||||||| || || ||| | | Sbjct 584822 ATGCAGACCTTTGTGAAGACCCTGACGGGCAAGACCATCACACCTGAGGTCGAGCCCAGT 584763 Query 25059 GACACTATCGAGTCACTGAAGCAAA---AAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || |||| ||||| ||||| || || || ||||||||| Sbjct 584762 GACACTATTGAG--AATGT--CAAAGCTAAATCCAAGACAAGGAGGGCATCCCACCTGAC 584707 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||||| |||||||| | || |||| |||||| | || || Sbjct 584706 CAGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCT--CTGACTAG 584649 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| ||||| || || || ||||| Sbjct 584648 AATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 584614 >seq56 Length=5443799 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/218 (70%), Gaps = 16/218 (7%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||| || ||||| |||||| |||| || || |||||||| | || || ||| | | Sbjct 2722714 ATGCGGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACACTGGAGGTTGAGCCCAGT 2722655 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| || ||||| || || |||||||||||| Sbjct 2722654 GACACCATGGAG--AATGTTAAAGCTAAAATCCAA-GACAAGGAGGGCATTCCACCTGAC 2722598 Query 25116 CAACAGCGG---ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || |||| | | |||||||| |||||||| | || ||| ||| | | || Sbjct 2722597 CAGCAGCAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGAT-ATCTCTC------AGAC 2722545 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| | ||||| ||||| || || || ||||| Sbjct 2722544 TATAATATCTAGAAAGAGTCCACCCTGCACTTGGTGCT 2722507 >seq45 Length=5545317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/216 (70%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||||||| |||| || || | | Sbjct 1737896 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTCAAGCC---T 1737840 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | ||| | || |||| |||| || ||||| || || || ||||||||| Sbjct 1737839 GACACCACTGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 1737783 Query 25116 CAACAGCGGATTATTTTTG-CCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| | | ||||||| ||| |||| | || |||| || |||| | || || Sbjct 1737782 CAGCAGAGTCTGATTTTTGTGGGGCCAACAGCTGGAGGATGGTCACACTCTCTCAGACTA 1737723 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| ||||| || || || ||||| Sbjct 1737722 TAATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 1737687 >seq210 Length=3024228 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| | || |||| ||| |||| || ||| | | Sbjct 2224560 ATGCAGATCTTCGTGAAGACCCTGACCAGCAAGACCATAACACTCGAGGTCGAGCCTAGT 2224501 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || |||| |||| || ||||| || || || ||||||||| Sbjct 2224500 GACACTATTGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 2224444 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | |||||| ||||||||| | || |||| | |||| | || ||| Sbjct 2224443 CAGCAGTGTCTGGTTTTTGTGGGCAAACAACTGGAGGATGTCCACACTCTCTCAGACTAC 2224384 Query 25176 AATATTCAAAAAGAATCCACGCTACATTT 25204 |||| | ||| | ||||| || || || Sbjct 2224383 AATAACTAGAAACAGTCCACTCTGCACTT 2224355 >seq73 Length=4601553 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||| |||| || || |||||||| |||| || ||| | | Sbjct 4089878 ATGCAGATCTTTGTGTAGACCCTGACGGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 4089937 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||| || | || |||| |||| || ||||| || || || ||||||||| Sbjct 4089938 GACACTACTAAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 4089994 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || | || | ||||||| |||||||| | || ||| | ||| | | ||| Sbjct 4089995 CAGCTGCATCTGATTTTTGTTGGCAAACAGCTGGAGGAT----GGACTCTCTCAGCCTAC 4090050 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| ||||| || || || ||||| Sbjct 4090051 AATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 4090085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433288016148365