Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06]
7,571 sequences; 2,236,581,172 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 123 2e-23
seq717 109 5e-19
seq298 98.7 9e-16
seq56 87.8 2e-12
seq45 87.8 2e-12
seq210 86.0 5e-12
seq73 82.4 7e-11
>seq5307
Length=1324
Score = 123 bits (136), Expect = 2e-23
Identities = 158/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || |||||||| | || || ||| | |
Sbjct 729 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 788
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| ||| | || |||| |||| || ||||| || || || |||||||||
Sbjct 789 GACACTATTGAG--AATGCCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 845
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | |||||||| |||||||| | || |||| |||||| | || ||
Sbjct 846 CAGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTAT 905
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| ||||| ||||| || |||||
Sbjct 906 AATATCCAGAAAGAGTCCACTCTACACTTGGTGCT 940
>seq717
Length=839118
Score = 109 bits (120), Expect = 5e-19
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || |||||||| | || || ||| | |
Sbjct 563669 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTTGAGGTCGAGCCCAGT 563610
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| ||| | || |||| |||| || ||||| || || || |||||||||
Sbjct 563609 GACACTATTGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 563553
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| |||| | |||||||| |||||||| | || |||| |||||| | || |
Sbjct 563552 CAGCAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTGT 563493
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| ||||| || || || |||||
Sbjct 563492 AATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 563458
>seq298
Length=2265018
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/215 (71%), Gaps = 9/215 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| | ||||| ||||| |||| || || |||||||| || || ||| | |
Sbjct 584822 ATGCAGACCTTTGTGAAGACCCTGACGGGCAAGACCATCACACCTGAGGTCGAGCCCAGT 584763
Query 25059 GACACTATCGAGTCACTGAAGCAAA---AAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| ||| | || |||| ||||| ||||| || || || |||||||||
Sbjct 584762 GACACTATTGAG--AATGT--CAAAGCTAAATCCAAGACAAGGAGGGCATCCCACCTGAC 584707
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | ||||||| |||||||| | || |||| |||||| | || ||
Sbjct 584706 CAGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCT--CTGACTAG 584649
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| ||||| || || || |||||
Sbjct 584648 AATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 584614
>seq56
Length=5443799
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/218 (70%), Gaps = 16/218 (7%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||| || ||||| |||||| |||| || || |||||||| | || || ||| | |
Sbjct 2722714 ATGCGGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACACTGGAGGTTGAGCCCAGT 2722655
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| | || |||| |||| || ||||| || || ||||||||||||
Sbjct 2722654 GACACCATGGAG--AATGTTAAAGCTAAAATCCAA-GACAAGGAGGGCATTCCACCTGAC 2722598
Query 25116 CAACAGCGG---ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
|| |||| | | |||||||| |||||||| | || ||| ||| | | ||
Sbjct 2722597 CAGCAGCAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGAT-ATCTCTC------AGAC 2722545
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| | ||||| ||||| || || || |||||
Sbjct 2722544 TATAATATCTAGAAAGAGTCCACCCTGCACTTGGTGCT 2722507
>seq45
Length=5545317
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/216 (70%), Gaps = 10/216 (5%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || |||||||| |||| || || | |
Sbjct 1737896 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTCAAGCC---T 1737840
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| | ||| | || |||| |||| || ||||| || || || |||||||||
Sbjct 1737839 GACACCACTGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 1737783
Query 25116 CAACAGCGGATTATTTTTG-CCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||| | | ||||||| ||| |||| | || |||| || |||| | || ||
Sbjct 1737782 CAGCAGAGTCTGATTTTTGTGGGGCCAACAGCTGGAGGATGGTCACACTCTCTCAGACTA 1737723
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| ||||| || || || |||||
Sbjct 1737722 TAATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 1737687
>seq210
Length=3024228
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| | || |||| ||| |||| || ||| | |
Sbjct 2224560 ATGCAGATCTTCGTGAAGACCCTGACCAGCAAGACCATAACACTCGAGGTCGAGCCTAGT 2224501
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| ||| | || |||| |||| || ||||| || || || |||||||||
Sbjct 2224500 GACACTATTGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 2224444
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | | |||||| ||||||||| | || |||| | |||| | || |||
Sbjct 2224443 CAGCAGTGTCTGGTTTTTGTGGGCAAACAACTGGAGGATGTCCACACTCTCTCAGACTAC 2224384
Query 25176 AATATTCAAAAAGAATCCACGCTACATTT 25204
|||| | ||| | ||||| || || ||
Sbjct 2224383 AATAACTAGAAACAGTCCACTCTGCACTT 2224355
>seq73
Length=4601553
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/215 (69%), Gaps = 10/215 (5%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||| |||| || || |||||||| |||| || ||| | |
Sbjct 4089878 ATGCAGATCTTTGTGTAGACCCTGACGGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 4089937
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||||| || | || |||| |||| || ||||| || || || |||||||||
Sbjct 4089938 GACACTACTAAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 4089994
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| | || | ||||||| |||||||| | || ||| | ||| | | |||
Sbjct 4089995 CAGCTGCATCTGATTTTTGTTGGCAAACAGCTGGAGGAT----GGACTCTCTCAGCCTAC 4090050
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| ||||| || || || |||||
Sbjct 4090051 AATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 4090085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433288016148365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |