Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq5790 123 6e-24 >seq5790 Length=1233 Score = 123 bits (136), Expect = 6e-24 Identities = 196/274 (72%), Gaps = 14/274 (5%) Strand=Plus/Plus Query 14345 ATCACGTTCTGGGTCAACCGCCTGGCGCAGTGGATGT--TCTA---CGGCGCGTGCGACC 14399 ||| ||||||||||| | | | |||| | |||| | |||| ||| ||| ||| | Sbjct 879 ATCTCGTTCTGGGTCGA--GAC--GCGCCG-GGATCTCGTCTATTTCGGGGCGATCGATC 933 Query 14400 CGTCCCTGGGTAAGCAAGGTTCCAG--CCGCGACCCCAGCGCCATCCTGGTGGGTGGGTT 14457 |||| || || |||| || | || ||| ||||| |||||||||| | |||||| | Sbjct 934 CGTCGCTCGGAAAGC--GGAACAAGAGCCGTGACCCATCCGCCATCCTGATCGGTGGGAT 991 Query 14458 CAACCGGGAGACAGGCGTCCTGGACGTGGTCGAGGCCGCCATCCGCAAACGCCTGCCGGA 14517 ||||| ||| ||| |||||||||||||||| | |||||| || |||||||| Sbjct 992 GGACCGGCTGACCGGCAAGATGGACGTGGTCGAGGCATCAATCCGCCGCCGTCTGCCGGA 1051 Query 14518 CAAGATCATCGAGGACATCATCGCCATGCAGCGGGCCTATCACTGCCTGGTGTGGGGCGT 14577 || |||||||| ||| | |||||| | ||||| | |||| || || ||||| ||| Sbjct 1052 CATGATCATCGCGGATACCATCGCGCTTCAGCGAGAGTATCGGTGTCTCTTGTGGTTCGT 1111 Query 14578 TGAGGCGGTCCAGTTCCAGGAGTTCCTGCGCACC 14611 || ||||||||||||| |||||| | ||| Sbjct 1112 GGAAAGCATCCAGTTCCAGGAATTCCTGAGGACC 1145 Score = 107 bits (118), Expect = 4e-19 Identities = 175/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 13691 GAGGCGATCAAGGCGGAGCTGGAGTTCAACCCGCGCCT--GGCCATGGACTTCCCCCAGG 13748 ||||| || ||||| |||||| ||||||||| || || | ||| ||||| | | Sbjct 302 GAGGCCATTAAGGCCGAGCTGACCAACAACCCGCGGCTTCGGTC--GGATTTCCCGGATG 359 Query 13749 GCGCCGGCAAGGGCCGCGTTTGGCAGGTCGGCACCATCGTTACGGCGAACGATGCCAAGG 13808 ||||||||| || || |||| | ||| || |||| | | | | | | Sbjct 360 CGTGCGGCAAGGGGCGGGTCTGGCGCGAAGGCCAGATTATTACCCGTACCAACGTAATGA 419 Query 13809 TCCAGGTCTTCGGCTCCGGCAAGCGGATGCGCGGCCTTCGACACGGCCCGCACCGTCCTG 13868 ||| || | ||||| ||||| || | |||||||| | |||||||| || |||| || | Sbjct 420 TCCTGGGCCTCGGCGCCGGCCAGAAGGTGCGCGGCTTGCGACACGGTCCATACCGACCCG 479 Query 13869 ACCTGGTGATCGGCGACGACCTGGAGAACGACGAGAACGTCCGCAGCCCGGAGCAGCGCG 13928 |||| ||||| ||||||||||||||||||||| |||||| ||||| ||||| | Sbjct 480 ACCTTCTGATCTTCGACGACCTGGAGAACGACGAAGCTGTCCGCGTGCCGGATCAGCGGG 539 Query 13929 ACAAGCTGGA 13938 |||| |||| Sbjct 540 ACAAATTGGA 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116395934409854