Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4771 104 2e-17 >seq4771 Length=1398 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || || | ||||||| ||| Sbjct 1315 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTCCACGATCTAATGAA 1256 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 1255 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 1216 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || || | ||||||| ||| Sbjct 1315 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTCCACGATCTAATGAA 1256 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 1255 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 1216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397025762431942