Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5307 114 1e-20 seq298 104 3e-17 seq129 91.5 2e-13 seq1241 89.7 6e-13 seq458 89.7 6e-13 seq325 89.7 6e-13 seq304 84.2 2e-11 >seq5307 Length=1324 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| | |||||| || | ||| ||| || || ||||| || || | Sbjct 956 ACCACCTCGCAGACGAAGCACCAAGTGTAGAGTGGACTCTTTCTGGATATTATAGTCTGA 897 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||| || || || || || || ||||||||||| | ||| Sbjct 896 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGG 837 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||||||| |||||| |||| || | | ||||| || | || || Sbjct 836 GATGCCCTCCTTGTCTTGGATTTTAGCTTTGGCATTCTCAATAGTGTCACTGGGCTCGAC 777 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| |||||||| || ||||| |||||||| ||||| Sbjct 776 CTCAAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 729 >seq298 Length=2265018 Score = 104 bits (114), Expect = 3e-17 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| | |||||| |||| ||| ||| || || ||||| || |||| Sbjct 584598 ACCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAG- 584656 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||| || || | || || || ||||||||||| | ||| Sbjct 584657 -AGAGTGCGGCCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGG 584715 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| | || ||| ||||| || | | ||||| || | || || Sbjct 584716 GATGCCCTCCTTGT-CTTGGATTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGAC 584774 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| |||||||| || ||||| |||||| | ||||| Sbjct 584775 CTCAGGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGGTCTGCAT 584822 >seq129 Length=3840824 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 538945 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 538886 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 538885 TACTAACGAGGAT 538873 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 554101 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 554042 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 554041 TACTAACGAGGA 554030 >seq1241 Length=281424 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 271604 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 271545 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 271544 TACTAACGAGGA 271533 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 275782 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 275723 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 275722 TACTAACGAGGA 275711 >seq458 Length=1662263 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1194329 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 1194270 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 1194269 TATACTAACGAGGA 1194256 >seq325 Length=1976410 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1943138 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1943197 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1943198 TACTAACGAGGA 1943209 >seq304 Length=2338375 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| | || |||| ||| || || ||||| || || | ||||| | | || || Sbjct 1425271 CACCAAGTACAGGGTGCACTCTTTATGGATATTATAGTCCG--AGAGTGCTGCCATCTTC 1425214 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || || || || || || ||||||||||| | ||| | || ||||||||| Sbjct 1425213 CAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGATGGGATGCCCTCCTTGTCTTG 1425154 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||||| ||||| ||| | ||||| || | || | | |||||||| || Sbjct 1425153 TATTTTAGCTTTGACAGTCTCAGTAGTGTCCCT-GGGCCCGGACTCAGTGTGATGGTCTT 1425095 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| | || ||||| |||||||| ||||| Sbjct 1425094 GCCCATCAGGGTCTTCACAAAGATCTGCAT 1425065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543161391698640