Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_011041.1 Length=137947 Score E Sequences producing significant alignments: (Bits) Value seq6988 136 3e-27 seq4817 125 6e-24 >seq6988 Length=1074 Score = 136 bits (150), Expect = 3e-27 Identities = 205/291 (70%), Gaps = 3/291 (1%) Strand=Plus/Plus Query 134663 ATCCCTCATTAAGCCCAGCCAAACGGAATGCTCCAGGCTATCATCGTAGTGCTCAAAAGC 134722 ||||| |||||| |||| ||||| |||||||||||| | ||||||||| ||| || || Sbjct 462 ATCCCGCATTAAACCCAACCAAATGGAATGCTCCAGCCCATCATCGTAATGCGTGAATGC 521 Query 134723 CCTCCCGGTATTGAATGGTGGGTCTATGTAAACACACTTCACTTTGCCTGCATACTCTTG 134782 || ||||| || | || ||||| || |||| |||||||| || || | | | || || Sbjct 522 GCTACCGGTGTTATAGGGCGGGTCGATAAAAACGCACTTCACCTTTCCAGAAAATTCCTG 581 Query 134783 CTCTAGCGCCTTCAATGCTAATAAGTTATCTCCAAAAATCAGTTTATTATCAAAAATATC 134842 ||| |||||||||| || | | ||| || ||||| ||||| ||||| || || || Sbjct 582 CTCCAGCGCCTTCAGCGCCAGCAGGTTGTCGCCAAAGATCAGCCGGTTATCGAAGATGTC 641 Query 134843 GTTTTCGGTCAC---TTTCTGGCTGTGGTAAGACTTGCTAGAATCTTCTAACAAAATGTG 134899 ||| || ||||| | || ||| || ||||| | |||||| | || ||| | Sbjct 642 GTTGTCCGTCACGCGATGCTTCGCGTGATATGACTTTTCCGGATCTTCCAGCAGGATGCG 701 Query 134900 CTGCTCTAACTTTTTGCGCTCGTTTTTACCTATCCAGGTAAGTTCTAATTT 134950 | |||| | ||| |||| | || || ||||| || ||||| | ||| Sbjct 702 CGGCTCCAGCTTGGGCCGCTTCTCCTTGCCGATCCAAGTCAGTTCAAGTTT 752 >seq4817 Length=1474 Score = 125 bits (138), Expect = 6e-24 Identities = 156/210 (74%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 133682 GTAATAGCGGAAGCCACCGCCACCTTGCCAGCTTGCAGACTTAGA--AATACCACCTTGA 133739 ||||||||||||||| ||||| |||| ||||| ||| ||| | | || ||||| Sbjct 1096 GTAATAGCGGAAGCCGCCGCCGCCTTTCCAGCCCACAG-CTTCGGTGACGCCCCCCTTG- 1153 Query 133740 TCTTCACCATCAATCACTTTTTGCAAGCGAGGGATAATATGGGTATGACAATGATCACCC 133799 || |||||||||||||| || | || ||| ||||| || |||||||| || || || ||| Sbjct 1154 TCCTCACCATCAATCACCTTCTTCAGGCGCGGGATGATGTGGGTATGGCAGTGCTCGCCC 1213 Query 133800 AGTTCGATCAAGATCCAACGTCTTTTCATCTTGTGGGCTACAGCAGCAGTAGTTCCCGAA 133859 || || | || |||||| || | ||| |||||||| || || | || || || ||| Sbjct 1214 AGCTCCACCATGATCCAGCGGCGCCCCATTTTGTGGGCCACCGCGCCGGTGGTGCCGGAA 1273 Query 133860 CCGCCGAATGAATCCAATACCAAATCACCT 133889 || |||| ||||| | |||||| || ||| Sbjct 1274 CCAGCGAAGGAATCGAGTACCAAGTCTCCT 1303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441260636244120