Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq5790 107 5e-19 >seq5790 Length=1233 Score = 107 bits (118), Expect = 5e-19 Identities = 190/272 (70%), Gaps = 10/272 (4%) Strand=Plus/Plus Query 14966 ATCACGTTCTGGGTCAACCGCCTGGCGCAGTGGATGT--TCTA---CGGCGCGTGCGACC 15020 ||| ||||||||||| | | | |||| | |||| | |||| ||| ||| ||| | Sbjct 879 ATCTCGTTCTGGGTCGA--GAC--GCGCCG-GGATCTCGTCTATTTCGGGGCGATCGATC 933 Query 15021 CGTCCCTGGGTAAGCAAGGCTCCAGTCGCGACCCCAGTGCCATCCTGGTGGGTGGGTTCA 15080 |||| || || |||| | || || ||||| ||||||||| | |||||| | Sbjct 934 CGTCGCTCGGAAAGCGGAACAAGAGCCGTGACCCATCCGCCATCCTGATCGGTGGGATGG 993 Query 15081 ACCGGGAGACAGGCGTCCTGGACGTGGTCGAGGCCGCCATCCGCAAGCGCCTGCCGGACA 15140 ||||| ||| ||| |||||||||||||||| | |||||| || |||||||||| Sbjct 994 ACCGGCTGACCGGCAAGATGGACGTGGTCGAGGCATCAATCCGCCGCCGTCTGCCGGACA 1053 Query 15141 AGATCATCGAGGACATCATCGCCATGCAACGGGCCTATCACTGCCTGGTGTGGGGTGTCG 15200 |||||||| ||| | |||||| | || || | |||| || || ||||| || | Sbjct 1054 TGATCATCGCGGATACCATCGCGCTTCAGCGAGAGTATCGGTGTCTCTTGTGGTTCGTGG 1113 Query 15201 AGGCGGTCCAGTTCCAGGAGTTCCTGCGCACC 15232 | ||||||||||||| |||||| | ||| Sbjct 1114 AAAGCATCCAGTTCCAGGAATTCCTGAGGACC 1145 Score = 100 bits (110), Expect = 7e-17 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 14312 GAAGCGATCAAGGCGGAGCTGGAGTTCAACCCGCGCCTGGCCACCGACTTCCCCCAGGGC 14371 || || || ||||| |||||| ||||||||| || | || ||||| | | Sbjct 302 GAGGCCATTAAGGCCGAGCTGACCAACAACCCGCGGCTTCGGTCGGATTTCCCGGATGCG 361 Query 14372 GCCGGCAAGGGCCGCGTCTGGCAGGTCGGCACCATCGTTACGGCGAACGATGCCAAGGTC 14431 ||||||||| || ||||||| | ||| || |||| | | | | | | || Sbjct 362 TGCGGCAAGGGGCGGGTCTGGCGCGAAGGCCAGATTATTACCCGTACCAACGTAATGATC 421 Query 14432 CAGGTCTTCGGCTCCGGCAAGCGGATGCGCGGCCTTCGACACGGCCCGCACCGTCCTGAC 14491 | || | ||||| ||||| || | |||||||| | |||||||| || |||| || ||| Sbjct 422 CTGGGCCTCGGCGCCGGCCAGAAGGTGCGCGGCTTGCGACACGGTCCATACCGACCCGAC 481 Query 14492 CTGGTGATCGGCGACGACCTGGAGAACGACGAGAACGTCCGCAGCCCGGAGCAACGCGAC 14551 || ||||| ||||||||||||||||||||| |||||| ||||| || || ||| Sbjct 482 CTTCTGATCTTCGACGACCTGGAGAACGACGAAGCTGTCCGCGTGCCGGATCAGCGGGAC 541 Query 14552 AAGCTGGA 14559 || |||| Sbjct 542 AAATTGGA 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117899799191794