Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq23 165 1e-35 seq881 104 3e-17 >seq23 Length=7404865 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| ||| |||||||||| || || ||||| || ||||| || || Sbjct 3588189 GTCTGGAACAACTGCTCATCATCCCATTCCGGATGCTCCTGTTTAAGCACATCACACACT 3588248 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 |||||||| |||| ||||| || ||||| |||||||| | || ||||| | || ||| Sbjct 3588249 CTGTTGTGCTCTCGAAGCCAAATCGTGGCATACATCATCAGGCCAGGCACCAGGCCGAAC 3588308 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| ||||| | || || || | || | ||| | ||| | | Sbjct 3588309 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGGGGATAGATCATCTCC 3588368 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 ||||| | |||||||| ||||| ||||||| || || ||||| |||| Sbjct 3588369 ACCTGAGAATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACCT 3588417 Score = 149 bits (164), Expect = 9e-31 Identities = 202/282 (72%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| || ||||| || || || || |||||||| | || || || | ||| | Sbjct 3586619 GGACAGCCTTTCACGTTATTGCAGATAAGAGACTGAATTGAGGCAGTGTTGATGATTTTA 3586678 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 |||||||| || || || || ||||| || ||||||||| || || || || || Sbjct 3586679 AAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACTGAGGAGAACATATAGGATTG 3586738 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || || |||||||| || || || || || || | ||| ||||||| |||||| Sbjct 3586739 CCCATAAGTCCCTTCAAGGAGAAAGGTGCTCCAAGTTCTACCATGGTCTCACCAAAGATG 3586798 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 || | ||||| || || || || | | | ||| || || || | || || ||||| Sbjct 3586799 GCGTCTGGACGAGGCTTCTCTACCAGAAGGGCAGGATACAGCTCCATGGCATCAACGTCA 3586858 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||||||||| ||||| ||||| || |||||||| ||| Sbjct 3586859 CCATAGAGGGCTTCTAACTCCGCAGCCATTTCCTTCTCGCCT 3586900 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| |||||||| || || | ||| ||| ||| ||| Sbjct 2331935 TCACCTTTCACACCCATGGGAGTCGGGCAGTCGTCAGCCACAGCAGGAAGAACTCTGGTA 2331994 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| | ||| ||||| ||||||||||| ||||| |||| | || ||||| Sbjct 2331995 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTGTAACCATGCTGTACATTGTAAGTT 2332054 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || |||||||||| | || |||||| Sbjct 2332055 GGCGGGCTGTCAATCAAATGTGATCTGGCT 2332084 Score = 87.8 bits (96), Expect = 3e-12 Identities = 192/286 (67%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| |||||||| || |||| | || || | || | || Sbjct 3587570 CCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTCAGCCCATGTTCCATTAATATC 3587629 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || || || |||| | || | || |||| ||| Sbjct 3587630 GAGTTGTTGTAGAGAAACTGCCGATAGTTGTACTCCTGATCTTCAATTTGAAAGGTGTCA 3587689 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| || || || |||||||||||| Sbjct 3587690 GGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATACGGTTCTGGTAC 3587749 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | || | ||||| || || | Sbjct 3587750 TGGAATTGTTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTAAAGTGATAGCCAC 3587807 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||| ||||| | | || | || ||||| ||||| || Sbjct 3587808 TCAAGTGCTGTACATAGTCTTCTATCACGATCTTAATAGTTTCTCC 3587853 >seq881 Length=711898 Score = 104 bits (114), Expect = 3e-17 Identities = 174/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || ||||| || |||| || || | || || || || ||||| | ||||| || Sbjct 86300 GTGGCTGTTTTGACAATGTTGAAGCCCATCTCGCCACCAAATGTGCTCGACTTCCAATAT 86359 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| |||| | | ||| || || | |||||| |||| || | || Sbjct 86360 TCTGGAGAACAGATGGGGTTCCCTAAGAGGCCCTTGAGGGAAAAGGGAGATCCGATTTCT 86419 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111 || || ||||| || ||||||| ||| | || || | || | || || | ||| Sbjct 86420 ATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAA-GAAGCAGTCCCGGGTA 86478 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| ||| |||||||| |||||||||| || || ||||||||||| Sbjct 86479 GAACTCCAAGGCATCGATGTCTCCATAGAGCTCTTCCAACTCAGCTGCCATCTCCTTCTC 86538 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 86539 TCCTACAAG 86547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723659508191400