Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5307 113 5e-20 seq717 111 2e-19 seq298 96.9 4e-15 seq13 86.0 7e-12 >seq5307 Length=1324 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||| ||||| || |||||||| | || || ||||| ||||| || || Sbjct 920 CTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 861 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || ||||||||| ||| || ||| | Sbjct 860 AATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGGCATT 801 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || || | |||||||| ||||||||||| || || || Sbjct 800 CTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTCTTGCCCGTCAGGGTCTTCAC 741 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 740 AAAGATCTGCAT 729 >seq717 Length=839118 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| || ||| || |||||||| |||| || |||||||| | Sbjct 563454 ACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTACAGTCTGAGAGAGTGCGGCC 563513 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| ||||| || || |||| |||||||||| | || | || |||||| Sbjct 563514 ATCCTCCAGCTGTTTGCCTGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTT 563573 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| || |||| || | | ||||| || | || || || | ||||| Sbjct 563574 GTCTTGGATTTTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCAAGTGTGAT 563633 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||||||||| || || |||||||| ||||| Sbjct 563634 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 563669 >seq298 Length=2265018 Score = 96.9 bits (106), Expect = 4e-15 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| | ||||| |||| || ||| || |||||||| ||||| || Sbjct 584599 CCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTCTAGTCAGA- 584657 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||||| | || || ||||| ||||| | || |||| ||||||||||| | || Sbjct 584658 -GAGTGCGGCCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGG 584716 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| ||| || |||| || | | ||||| || | || || Sbjct 584717 ATGCCCTCCTTGTCTTGGAT-TTAGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACC 584775 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| ||||||||||| || || |||||| | ||||| Sbjct 584776 TCAGGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGGTCTGCAT 584822 >seq13 Length=8615514 Score = 86.0 bits (94), Expect = 7e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATA-GAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGA 46460 ||| || ||||||| ||||| || | |||||| | || | |||| ||||| || | Sbjct 1044057 CTCTTTCAGGATATTATAGTCTGAGAAGAGTGCAGCCATCCTACAGCTATTTGCCTGCCA 1044116 Query 46461 ATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520 |||||| | |||||||||| | || || ||||||||| ||| || |||| Sbjct 1044117 ATATCAGGTGCTGCTGGTCAGATGGGGTGC-CTCCTTGTCTTGGATTTTAGCTTTGACAT 1044175 Query 46521 TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | ||||| || | || || || | |||||||| ||||||||||| || || | Sbjct 1044176 TCTCAATAGTGTCCCTGGGCTCAACCTCAAGTGTGATGGTCTTGCCCGTCAGGGTCTTCA 1044235 Query 46581 CAAAGATTTGC 46591 ||||||| ||| Sbjct 1044236 CAAAGATCTGC 1044246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565184907250920